Wall clock time and date at job start Mon Mar 30 2020 02:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30634 * 1 3 3 Si 1.86798 * 119.99968 * 2 1 4 4 H 1.48499 * 109.47140 * 269.99745 * 3 2 1 5 5 H 1.48501 * 109.47378 * 30.00112 * 3 2 1 6 6 H 1.48500 * 109.46990 * 150.00197 * 3 2 1 7 7 C 1.40339 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99843 * 180.02562 * 7 2 1 9 9 C 1.39803 * 119.99852 * 359.97438 * 7 2 1 10 10 N 1.32814 * 125.79737 * 180.30820 * 9 7 2 11 11 C 1.33061 * 108.64930 * 180.15737 * 10 9 7 12 12 C 1.50697 * 126.01110 * 179.86797 * 11 10 9 13 13 N 1.46905 * 109.47066 * 274.68995 * 12 11 10 14 14 C 1.35936 * 107.98075 * 359.60195 * 11 10 9 15 15 O 1.34607 * 107.35832 * 0.24383 * 14 11 10 16 16 H 0.97005 * 119.99572 * 359.97438 * 1 2 3 17 17 H 1.09001 * 109.47558 * 154.69159 * 12 11 10 18 18 H 1.08998 * 109.47216 * 34.68821 * 12 11 10 19 19 H 1.00901 * 110.99869 * 56.04737 * 13 12 11 20 20 H 1.00896 * 110.99543 * 179.97438 * 13 12 11 21 21 H 1.07998 * 126.32260 * 180.26311 * 14 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.4879 2.0464 -1.4001 5 1 1.4378 2.6527 0.7001 6 1 3.5379 1.4401 0.7000 7 6 2.0080 -1.2154 -0.0005 8 1 3.0880 -1.2154 -0.0001 9 6 1.3089 -2.4261 -0.0005 10 7 1.8534 -3.6375 0.0048 11 6 0.8779 -4.5424 -0.0006 12 6 1.0573 -6.0387 -0.0002 13 7 1.2352 -6.5109 -1.3799 14 6 -0.3091 -3.8799 -0.0006 15 8 -0.0336 -2.5623 -0.0005 16 1 -0.4850 0.8401 0.0004 17 1 0.1759 -6.5103 0.4343 18 1 1.9365 -6.2990 0.5891 19 1 2.0080 -6.0401 -1.8263 20 1 1.3581 -7.5120 -1.4063 21 1 -1.2918 -4.3279 -0.0003 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261320131.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:03 Heat of formation + Delta-G solvation = 0.985932 kcal Electronic energy + Delta-G solvation = -9242.285440 eV Core-core repulsion = 7312.106508 eV Total energy + Delta-G solvation = -1930.178931 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.064 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.90893 -34.65602 -33.61671 -31.98124 -29.08138 -26.01574 -23.82493 -20.69427 -19.39574 -17.39015 -15.44643 -15.24796 -14.65243 -14.47747 -13.73610 -13.26543 -13.12900 -11.89820 -11.33342 -11.26952 -11.08436 -10.65775 -10.35823 -9.58679 -9.28692 -8.57762 -8.22494 -7.39188 -6.88814 -4.64581 2.89868 3.03723 3.09502 3.37189 3.85804 4.10960 4.96649 5.17970 5.41387 5.74581 5.83559 6.14486 6.72488 6.99553 7.06391 7.52805 7.73231 7.83768 7.98825 8.22083 8.56078 8.72415 9.88063 10.14274 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.113155 B = 0.012873 C = 0.011952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 247.389615 B = 2174.645795 C = 2342.092019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.070 3.930 3 Si 0.931 3.069 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.433 4.433 8 H 0.109 0.891 9 C 0.346 3.654 10 N -0.614 5.614 11 C 0.004 3.996 12 C 0.153 3.847 13 N -0.845 5.845 14 C -0.195 4.195 15 O -0.186 6.186 16 H 0.285 0.715 17 H 0.071 0.929 18 H 0.030 0.970 19 H 0.345 0.655 20 H 0.331 0.669 21 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.900 -2.663 -0.059 2.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.152 4.152 3 Si 0.755 3.245 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.468 4.468 8 H 0.127 0.873 9 C 0.161 3.839 10 N -0.348 5.348 11 C -0.120 4.120 12 C 0.022 3.978 13 N -0.375 5.375 14 C -0.270 4.270 15 O -0.077 6.077 16 H 0.096 0.904 17 H 0.089 0.911 18 H 0.048 0.952 19 H 0.158 0.842 20 H 0.143 0.857 21 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 0.617 -2.336 -0.158 2.421 hybrid contribution 0.314 0.412 0.317 0.607 sum 0.931 -1.924 0.159 2.143 Atomic orbital electron populations 1.69721 1.07609 1.29915 1.33284 1.26112 0.95041 1.01951 0.92120 0.85926 0.80094 0.79082 0.79417 1.19102 1.19978 1.18195 1.18361 0.94716 0.85828 1.47898 0.87350 1.22077 0.76825 0.93374 0.91621 1.70759 1.31567 0.98166 1.34345 1.21125 0.90460 0.95001 1.05439 1.19775 0.99432 0.89619 0.88945 1.58737 1.51620 1.08903 1.18259 1.24099 0.98973 0.82493 1.21416 1.84844 1.26621 1.23734 1.72547 0.90364 0.91053 0.95176 0.84224 0.85729 0.80977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -21.00 11.98 55.57 0.67 -20.34 14 2 C 0.07 1.81 5.50 -17.27 -0.10 1.71 14 3 Si 0.93 18.76 29.56 -169.99 -5.03 13.73 14 4 H -0.27 -5.24 7.11 56.52 0.40 -4.84 14 5 H -0.27 -5.34 7.11 56.52 0.40 -4.94 14 6 H -0.26 -5.09 7.11 56.52 0.40 -4.69 14 7 C -0.43 -12.15 9.45 -38.21 -0.36 -12.51 14 8 H 0.11 2.89 7.85 -52.49 -0.41 2.48 14 9 C 0.35 10.31 7.66 -16.54 -0.13 10.18 14 10 N -0.61 -17.42 11.34 -9.65 -0.11 -17.53 14 11 C 0.00 0.11 6.62 -82.89 -0.55 -0.44 14 12 C 0.15 2.96 7.33 -4.97 -0.04 2.93 14 13 N -0.85 -14.61 9.61 -11.41 -0.11 -14.72 14 14 C -0.19 -5.02 12.13 29.91 0.36 -4.66 14 15 O -0.19 -5.51 9.06 3.08 0.03 -5.48 14 16 H 0.29 6.87 8.29 -40.82 -0.34 6.53 14 17 H 0.07 1.22 8.14 -51.93 -0.42 0.80 14 18 H 0.03 0.57 8.14 -51.93 -0.42 0.14 14 19 H 0.35 6.22 8.99 -39.29 -0.35 5.87 14 20 H 0.33 4.43 9.08 -39.29 -0.36 4.07 14 21 H 0.17 3.76 8.06 -52.49 -0.42 3.33 14 LS Contribution 200.11 15.07 3.02 3.02 Total: -1.00 -31.49 200.11 -3.86 -35.35 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -1.52 Total: 8.76 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -0.80 Total: -2.79 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: 0.45 Total: -52.58 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: 0.03 Total: -5.48 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 3.02 Total: 3.02 kcal Total: -31.49 -3.86 -35.35 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261320131.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.335 kcal (2) G-P(sol) polarization free energy of solvation -31.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds