Wall clock time and date at job start Mon Mar 30 2020 02:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30634 * 1 3 3 Si 1.86798 * 119.99968 * 2 1 4 4 H 1.48499 * 109.47140 * 269.99745 * 3 2 1 5 5 H 1.48501 * 109.47378 * 30.00112 * 3 2 1 6 6 H 1.48500 * 109.46990 * 150.00197 * 3 2 1 7 7 C 1.40339 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99843 * 180.02562 * 7 2 1 9 9 C 1.39803 * 119.99852 * 359.97438 * 7 2 1 10 10 N 1.32814 * 125.79737 * 180.30820 * 9 7 2 11 11 C 1.33061 * 108.64930 * 180.15737 * 10 9 7 12 12 C 1.50697 * 126.01110 * 179.86797 * 11 10 9 13 13 N 1.46905 * 109.47066 * 274.68995 * 12 11 10 14 14 C 1.35936 * 107.98075 * 359.60195 * 11 10 9 15 15 O 1.34607 * 107.35832 * 0.24383 * 14 11 10 16 16 H 0.97005 * 119.99572 * 359.97438 * 1 2 3 17 17 H 1.09001 * 109.47558 * 154.69159 * 12 11 10 18 18 H 1.08998 * 109.47216 * 34.68821 * 12 11 10 19 19 H 1.00901 * 110.99869 * 56.04737 * 13 12 11 20 20 H 1.00896 * 110.99543 * 179.97438 * 13 12 11 21 21 H 1.07998 * 126.32260 * 180.26311 * 14 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.4879 2.0464 -1.4001 5 1 1.4378 2.6527 0.7001 6 1 3.5379 1.4401 0.7000 7 6 2.0080 -1.2154 -0.0005 8 1 3.0880 -1.2154 -0.0001 9 6 1.3089 -2.4261 -0.0005 10 7 1.8534 -3.6375 0.0048 11 6 0.8779 -4.5424 -0.0006 12 6 1.0573 -6.0387 -0.0002 13 7 1.2352 -6.5109 -1.3799 14 6 -0.3091 -3.8799 -0.0006 15 8 -0.0336 -2.5623 -0.0005 16 1 -0.4850 0.8401 0.0004 17 1 0.1759 -6.5103 0.4343 18 1 1.9365 -6.2990 0.5891 19 1 2.0080 -6.0401 -1.8263 20 1 1.3581 -7.5120 -1.4063 21 1 -1.2918 -4.3279 -0.0003 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261320131.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:03 Heat of formation + Delta-G solvation = -26.093748 kcal Electronic energy + Delta-G solvation = -9243.459703 eV Core-core repulsion = 7312.106508 eV Total energy + Delta-G solvation = -1931.353194 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.064 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -42.98355 -36.35858 -35.60621 -33.90983 -31.05969 -27.95594 -25.56298 -22.75561 -21.39038 -19.36639 -17.39631 -16.91500 -16.55265 -16.33899 -15.35813 -15.12837 -14.82967 -13.58718 -13.20547 -12.99082 -12.77982 -12.68484 -11.96345 -11.57465 -11.25537 -10.68695 -9.68005 -9.41407 -8.83975 -6.75031 1.11051 1.39431 1.55507 1.58826 2.17372 2.18315 2.98274 3.18682 3.85768 4.00409 4.26499 4.61999 4.80782 5.04933 5.11868 5.77112 5.90324 6.08938 6.14025 6.53027 6.61779 6.66111 7.79601 8.21204 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.113155 B = 0.012873 C = 0.011952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 247.389615 B = 2174.645795 C = 2342.092019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.026 3.974 3 Si 1.017 2.983 4 H -0.255 1.255 5 H -0.260 1.260 6 H -0.251 1.251 7 C -0.464 4.464 8 H 0.112 0.888 9 C 0.310 3.690 10 N -0.638 5.638 11 C 0.000 4.000 12 C 0.158 3.842 13 N -0.846 5.846 14 C -0.219 4.219 15 O -0.214 6.214 16 H 0.298 0.702 17 H 0.099 0.901 18 H 0.036 0.964 19 H 0.340 0.660 20 H 0.356 0.644 21 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.209 -2.355 -0.106 2.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.193 4.193 3 Si 0.834 3.166 4 H -0.180 1.180 5 H -0.184 1.184 6 H -0.175 1.175 7 C -0.499 4.499 8 H 0.130 0.870 9 C 0.125 3.875 10 N -0.373 5.373 11 C -0.124 4.124 12 C 0.027 3.973 13 N -0.378 5.378 14 C -0.292 4.292 15 O -0.106 6.106 16 H 0.109 0.891 17 H 0.117 0.883 18 H 0.054 0.946 19 H 0.152 0.848 20 H 0.171 0.829 21 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 0.903 -2.084 -0.207 2.281 hybrid contribution 0.174 0.235 0.323 0.436 sum 1.077 -1.849 0.116 2.143 Atomic orbital electron populations 1.69779 1.09504 1.31913 1.32791 1.27264 0.95910 1.05591 0.90499 0.84694 0.78597 0.73257 0.80033 1.17973 1.18399 1.17455 1.18819 0.95222 0.86800 1.49020 0.87029 1.22691 0.77324 0.94578 0.92881 1.70762 1.32732 0.98522 1.35308 1.21954 0.89532 0.97366 1.03534 1.19850 1.01033 0.86061 0.90306 1.58647 1.51519 1.10745 1.16840 1.24849 1.00891 0.81541 1.21952 1.84796 1.26728 1.25769 1.73290 0.89115 0.88302 0.94606 0.84793 0.82916 0.77721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.05 11.98 21.90 0.26 -43.79 14 2 C 0.03 1.35 5.50 85.38 0.47 1.82 14 3 Si 1.02 37.54 29.56 68.60 2.03 39.57 14 4 H -0.26 -8.97 7.11 99.48 0.71 -8.26 14 5 H -0.26 -8.91 7.11 99.48 0.71 -8.20 14 6 H -0.25 -8.92 7.11 99.48 0.71 -8.21 14 7 C -0.46 -26.50 9.45 23.16 0.22 -26.28 14 8 H 0.11 6.06 7.85 -2.91 -0.02 6.03 14 9 C 0.31 18.88 7.66 84.92 0.65 19.53 14 10 N -0.64 -36.67 11.34 -297.41 -3.37 -40.05 14 11 C 0.00 0.02 6.62 41.84 0.28 0.29 14 12 C 0.16 5.82 7.33 85.55 0.63 6.45 14 13 N -0.85 -27.45 9.61 -190.00 -1.83 -29.28 14 14 C -0.22 -11.30 12.13 67.28 0.82 -10.48 14 15 O -0.21 -12.91 9.06 -11.88 -0.11 -13.02 14 16 H 0.30 14.21 8.29 -92.70 -0.77 13.44 14 17 H 0.10 3.08 8.14 -2.39 -0.02 3.06 14 18 H 0.04 1.28 8.14 -2.39 -0.02 1.26 14 19 H 0.34 11.82 8.99 -89.69 -0.81 11.01 14 20 H 0.36 8.52 9.08 -89.70 -0.81 7.70 14 21 H 0.21 8.72 8.06 -2.91 -0.02 8.69 14 Total: -1.00 -68.40 200.11 -0.31 -68.72 By element: Atomic # 1 Polarization: 26.88 SS G_CDS: -0.35 Total: 26.53 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: 3.06 Total: -8.68 kcal Atomic # 7 Polarization: -108.17 SS G_CDS: -4.94 Total: -113.11 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -0.11 Total: -13.02 kcal Atomic # 14 Polarization: 37.54 SS G_CDS: 2.03 Total: 39.57 kcal Total: -68.40 -0.31 -68.72 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261320131.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.622 kcal (2) G-P(sol) polarization free energy of solvation -68.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds