Wall clock time and date at job start Mon Mar 30 2020 01:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50706 * 109.47151 * 2 1 4 4 C 1.34945 * 125.49011 * 125.00468 * 3 2 1 5 5 N 1.36668 * 106.72577 * 180.20717 * 4 3 2 6 6 C 1.37573 * 126.88380 * 179.77552 * 5 4 3 7 7 H 1.08000 * 119.99677 * 359.97438 * 6 5 4 8 8 C 1.39001 * 120.00084 * 179.97438 * 6 5 4 9 9 N 1.31254 * 120.00176 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00156 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47176 * 60.00097 * 10 8 6 12 12 H 1.48500 * 109.47156 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47248 * 300.00130 * 10 8 6 14 14 N 1.40321 * 106.22714 * 359.64622 * 5 4 3 15 15 N 1.28756 * 108.03280 * 0.36116 * 14 5 4 16 16 H 1.08999 * 109.47365 * 59.99824 * 1 2 3 17 17 H 1.09004 * 109.46987 * 180.02562 * 1 2 3 18 18 H 1.09003 * 109.46786 * 299.99877 * 1 2 3 19 19 H 1.08996 * 109.47419 * 240.00023 * 2 1 3 20 20 H 1.08999 * 109.47635 * 119.99698 * 2 1 3 21 21 H 1.08002 * 126.63240 * 359.93419 * 4 3 2 22 22 H 0.97000 * 120.00647 * 179.97438 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.8877 1.9494 0.9000 5 7 3.0776 3.2548 0.5426 6 6 3.8714 4.1788 1.1819 7 1 4.4251 3.8960 2.0650 8 6 3.9608 5.4763 0.6913 9 7 3.2883 5.8197 -0.3823 10 14 5.0381 6.7311 1.5598 11 1 6.4442 6.2538 1.5700 12 1 4.9608 8.0298 0.8438 13 1 4.5651 6.9075 2.9563 14 7 2.3031 3.4628 -0.6088 15 7 1.7032 2.3589 -0.8904 16 1 -0.3634 0.5138 -0.8899 17 1 -0.3633 -1.0277 0.0005 18 1 -0.3633 0.5138 0.8900 19 1 1.8933 -0.5138 -0.8899 20 1 1.8934 -0.5138 0.8900 21 1 3.3323 1.4405 1.7425 22 1 3.3504 6.7252 -0.7245 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261320193.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:03 Heat of formation + Delta-G solvation = 53.428352 kcal Electronic energy + Delta-G solvation = -9158.606366 eV Core-core repulsion = 7328.420171 eV Total energy + Delta-G solvation = -1830.186195 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.075 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -42.00540 -36.21063 -34.44376 -33.15866 -29.74539 -27.50988 -24.28659 -23.17624 -21.40210 -19.19587 -17.46388 -16.15443 -15.94061 -15.23354 -14.99804 -14.55830 -13.75966 -13.35661 -13.16282 -12.81205 -12.44171 -12.13249 -12.01482 -11.64342 -11.42515 -11.05018 -10.63980 -9.27524 -8.69113 -6.62961 1.11835 1.37154 1.56147 1.65374 2.07411 2.22860 2.80435 2.92371 4.17210 4.28561 4.55903 4.61958 4.80606 4.94557 5.00403 5.09031 5.19242 5.43143 5.53381 5.96795 6.05488 6.60983 7.19846 8.23957 8.32300 Molecular weight = 167.08amu Principal moments of inertia in cm(-1) A = 0.126014 B = 0.012814 C = 0.011979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 222.143819 B = 2184.667896 C = 2336.879121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.022 4.022 3 C -0.071 4.071 4 C -0.131 4.131 5 N -0.166 5.166 6 C -0.346 4.346 7 H 0.147 0.853 8 C -0.004 4.004 9 N -0.812 5.812 10 Si 1.030 2.970 11 H -0.249 1.249 12 H -0.273 1.273 13 H -0.250 1.250 14 N -0.158 5.158 15 N -0.363 5.363 16 H 0.034 0.966 17 H 0.084 0.916 18 H 0.040 0.960 19 H 0.068 0.932 20 H 0.095 0.905 21 H 0.194 0.806 22 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.140 -4.197 5.864 7.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.062 4.062 3 C -0.220 4.220 4 C -0.284 4.284 5 N 0.061 4.939 6 C -0.482 4.482 7 H 0.165 0.835 8 C -0.218 4.218 9 N -0.440 5.440 10 Si 0.847 3.153 11 H -0.173 1.173 12 H -0.197 1.197 13 H -0.173 1.173 14 N -0.134 5.134 15 N -0.222 5.222 16 H 0.053 0.947 17 H 0.103 0.897 18 H 0.059 0.941 19 H 0.087 0.913 20 H 0.113 0.887 21 H 0.211 0.789 22 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.558 -3.013 4.515 5.648 hybrid contribution 0.644 0.091 0.807 1.036 sum 2.203 -2.922 5.322 6.459 Atomic orbital electron populations 1.21611 0.94900 1.01999 1.00678 1.19761 0.96015 0.87544 1.02843 1.21841 1.04491 0.99025 0.96638 1.23191 1.11014 0.86703 1.07505 1.47077 1.23635 1.07418 1.15762 1.20976 1.24230 0.90960 1.12013 0.83548 1.27151 0.97982 1.00565 0.96117 1.70309 1.33647 1.20918 1.19079 0.84499 0.77702 0.74844 0.78258 1.17301 1.19702 1.17340 1.82463 1.12906 1.15332 1.02719 1.73926 1.22927 0.99464 1.25845 0.94670 0.89694 0.94087 0.91333 0.88698 0.78872 0.90273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.28 9.87 71.98 0.71 -3.57 14 2 C -0.02 -0.78 6.49 29.85 0.19 -0.58 14 3 C -0.07 -3.45 6.37 41.56 0.26 -3.19 14 4 C -0.13 -6.37 11.45 83.18 0.95 -5.42 14 5 N -0.17 -9.51 3.78 -190.22 -0.72 -10.23 14 6 C -0.35 -18.20 10.31 83.98 0.87 -17.33 14 7 H 0.15 6.57 7.83 -2.91 -0.02 6.55 14 8 C 0.00 -0.18 5.50 84.96 0.47 0.28 14 9 N -0.81 -46.07 11.89 21.66 0.26 -45.81 14 10 Si 1.03 36.78 29.55 68.60 2.03 38.81 14 11 H -0.25 -8.27 7.11 99.48 0.71 -7.56 14 12 H -0.27 -9.54 7.11 99.48 0.71 -8.84 14 13 H -0.25 -8.29 7.11 99.48 0.71 -7.58 14 14 N -0.16 -9.98 11.73 37.02 0.43 -9.55 14 15 N -0.36 -21.04 12.29 -48.99 -0.60 -21.64 14 16 H 0.03 1.26 8.14 -2.39 -0.02 1.24 14 17 H 0.08 2.02 8.14 -2.38 -0.02 2.00 14 18 H 0.04 1.34 8.14 -2.39 -0.02 1.32 14 19 H 0.07 2.25 8.14 -2.39 -0.02 2.23 14 20 H 0.09 2.65 8.10 -2.39 -0.02 2.63 14 21 H 0.19 7.43 8.06 -2.91 -0.02 7.41 14 22 H 0.29 14.75 8.31 -92.71 -0.77 13.98 14 Total: -1.00 -70.91 205.41 6.06 -64.85 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 1.21 Total: 13.39 kcal Atomic # 6 Polarization: -33.26 SS G_CDS: 3.45 Total: -29.81 kcal Atomic # 7 Polarization: -86.60 SS G_CDS: -0.63 Total: -87.23 kcal Atomic # 14 Polarization: 36.78 SS G_CDS: 2.03 Total: 38.81 kcal Total: -70.91 6.06 -64.85 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261320193.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.275 kcal (2) G-P(sol) polarization free energy of solvation -70.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds