Wall clock time and date at job start Mon Mar 30 2020 01:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35075 * 126.12919 * 2 1 4 4 C 1.40859 * 107.92921 * 179.97438 * 3 2 1 5 5 N 1.39430 * 125.89531 * 179.97438 * 4 3 2 6 6 N 1.31464 * 108.21546 * 359.97438 * 4 3 2 7 7 N 1.36391 * 126.13340 * 179.68106 * 2 1 3 8 8 C 1.37189 * 126.04222 * 0.04516 * 7 2 1 9 9 H 1.07998 * 119.99922 * 359.97438 * 8 7 2 10 10 C 1.38936 * 119.99761 * 179.97438 * 8 7 2 11 11 N 1.31344 * 120.00060 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99811 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47262 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.46876 * 120.00256 * 12 10 8 15 15 H 1.48497 * 109.47453 * 240.00212 * 12 10 8 16 16 H 1.09002 * 109.47152 * 90.02890 * 1 2 3 17 17 H 1.09001 * 109.46980 * 330.02990 * 1 2 3 18 18 H 1.09004 * 109.47113 * 210.02971 * 1 2 3 19 19 H 1.08003 * 126.04107 * 359.92941 * 3 2 1 20 20 H 0.97002 * 120.00008 * 359.97438 * 5 4 3 21 21 H 0.97001 * 120.00152 * 180.02562 * 5 4 3 22 22 H 0.97003 * 119.99884 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0910 0.0000 4 6 3.6416 0.6510 0.0006 5 7 4.7709 1.4687 0.0003 6 7 3.6419 -0.6636 0.0015 7 7 2.3113 -1.1015 0.0061 8 6 1.8913 -2.4076 0.0125 9 1 0.8357 -2.6353 0.0134 10 6 2.8242 -3.4372 0.0178 11 7 4.1081 -3.1601 0.0172 12 14 2.2524 -5.2155 0.0273 13 1 0.7681 -5.2582 0.0270 14 1 2.7673 -5.9073 -1.1816 15 1 2.7674 -5.8946 1.2433 16 1 -0.3633 -0.0005 -1.0277 17 1 -0.3633 0.8903 0.5134 18 1 -0.3633 -0.8898 0.5143 19 1 1.9727 2.1191 -0.0011 20 1 4.6711 2.4336 -0.0008 21 1 5.6564 1.0727 0.0004 22 1 4.7594 -3.8790 0.0206 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300743933.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:29 Heat of formation + Delta-G solvation = 75.840803 kcal Electronic energy + Delta-G solvation = -9293.454279 eV Core-core repulsion = 7464.239960 eV Total energy + Delta-G solvation = -1829.214319 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.075 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.26692 -33.99638 -32.58952 -30.29874 -29.06082 -25.51166 -24.32573 -19.66634 -18.93684 -17.00579 -15.56073 -14.69562 -14.36000 -13.60064 -13.59052 -12.57229 -11.92323 -11.84614 -11.43552 -11.21893 -10.89727 -10.54153 -10.34382 -10.07133 -8.79980 -8.45925 -7.01054 -6.73119 -6.39842 -4.00288 3.03241 3.12845 3.17858 3.71795 3.93062 4.56719 4.63877 5.16538 5.43373 6.15773 6.35366 6.46129 6.70561 6.72330 7.13672 7.25022 7.74349 7.83475 7.98523 8.62677 8.87365 9.07435 9.64728 9.97677 10.56977 Molecular weight = 167.08amu Principal moments of inertia in cm(-1) A = 0.059233 B = 0.018350 C = 0.014117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.595154 B = 1525.530994 C = 1982.980492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.014 4.014 3 C -0.352 4.352 4 C 0.247 3.753 5 N -0.863 5.863 6 N -0.304 5.304 7 N -0.150 5.150 8 C -0.325 4.325 9 H 0.115 0.885 10 C 0.046 3.954 11 N -0.778 5.778 12 Si 0.929 3.071 13 H -0.264 1.264 14 H -0.276 1.276 15 H -0.276 1.276 16 H 0.053 0.947 17 H 0.058 0.942 18 H 0.057 0.943 19 H 0.110 0.890 20 H 0.392 0.608 21 H 0.388 0.612 22 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.033 2.142 0.019 3.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.148 4.148 3 C -0.388 4.388 4 C -0.003 4.003 5 N -0.414 5.414 6 N -0.141 5.141 7 N 0.083 4.917 8 C -0.457 4.457 9 H 0.132 0.868 10 C -0.169 4.169 11 N -0.406 5.406 12 Si 0.754 3.246 13 H -0.188 1.188 14 H -0.201 1.201 15 H -0.201 1.201 16 H 0.072 0.928 17 H 0.077 0.923 18 H 0.076 0.924 19 H 0.128 0.872 20 H 0.219 0.781 21 H 0.215 0.785 22 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.209 0.838 0.024 2.363 hybrid contribution -0.337 0.193 -0.007 0.388 sum -2.546 1.030 0.016 2.746 Atomic orbital electron populations 1.19977 0.90052 1.01269 1.00753 1.20451 0.93181 0.87279 1.13895 1.19939 0.90951 0.96870 1.31000 1.19377 0.87127 0.91098 1.02665 1.40786 1.04349 1.05836 1.90464 1.78329 0.96239 1.06193 1.33328 1.44329 1.01977 1.03887 1.41459 1.19789 0.94055 0.78400 1.53425 0.86765 1.25576 0.94903 1.00729 0.95730 1.70268 1.00345 1.32810 1.37153 0.85848 0.79350 0.81140 0.78281 1.18781 1.20110 1.20109 0.92798 0.92257 0.92442 0.87195 0.78136 0.78496 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.23 10.05 36.01 0.36 -0.87 14 2 C -0.01 -0.37 6.92 -81.69 -0.56 -0.93 14 3 C -0.35 -8.79 10.74 -39.72 -0.43 -9.22 14 4 C 0.25 6.47 8.44 -154.73 -1.31 5.16 14 5 N -0.86 -17.78 9.12 31.40 0.29 -17.49 14 6 N -0.30 -9.07 10.42 31.42 0.33 -8.75 14 7 N -0.15 -4.34 3.73 -7.91 -0.03 -4.37 14 8 C -0.33 -9.07 9.95 -14.90 -0.15 -9.22 14 9 H 0.11 2.88 7.04 -52.49 -0.37 2.51 14 10 C 0.05 1.24 5.50 -17.50 -0.10 1.15 14 11 N -0.78 -22.55 11.81 55.49 0.66 -21.89 14 12 Si 0.93 19.79 29.55 -169.99 -5.02 14.76 14 13 H -0.26 -5.34 7.11 56.52 0.40 -4.94 14 14 H -0.28 -5.80 7.11 56.52 0.40 -5.40 14 15 H -0.28 -5.80 7.11 56.52 0.40 -5.40 14 16 H 0.05 0.98 8.14 -51.93 -0.42 0.56 14 17 H 0.06 1.01 8.14 -51.93 -0.42 0.59 14 18 H 0.06 1.10 7.35 -51.93 -0.38 0.72 14 19 H 0.11 2.41 8.06 -52.48 -0.42 1.98 14 20 H 0.39 6.59 8.96 -40.82 -0.37 6.23 14 21 H 0.39 7.54 8.96 -40.82 -0.37 7.18 14 22 H 0.27 7.13 8.31 -40.82 -0.34 6.79 14 LS Contribution 202.52 15.07 3.05 3.05 Total: -1.00 -33.01 202.52 -4.80 -37.80 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -1.89 Total: 10.81 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: -2.18 Total: -13.94 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: 1.24 Total: -52.49 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 3.05 Total: 3.05 kcal Total: -33.01 -4.80 -37.80 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300743933.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.644 kcal (2) G-P(sol) polarization free energy of solvation -33.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds