Wall clock time and date at job start Mon Mar 30 2020 01:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35075 * 126.12919 * 2 1 4 4 C 1.40859 * 107.92921 * 179.97438 * 3 2 1 5 5 N 1.39430 * 125.89531 * 179.97438 * 4 3 2 6 6 N 1.31464 * 108.21546 * 359.97438 * 4 3 2 7 7 N 1.36391 * 126.13340 * 179.68106 * 2 1 3 8 8 C 1.37189 * 126.04222 * 0.04516 * 7 2 1 9 9 H 1.07998 * 119.99922 * 359.97438 * 8 7 2 10 10 C 1.38936 * 119.99761 * 179.97438 * 8 7 2 11 11 N 1.31344 * 120.00060 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99811 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47262 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.46876 * 120.00256 * 12 10 8 15 15 H 1.48497 * 109.47453 * 240.00212 * 12 10 8 16 16 H 1.09002 * 109.47152 * 90.02890 * 1 2 3 17 17 H 1.09001 * 109.46980 * 330.02990 * 1 2 3 18 18 H 1.09004 * 109.47113 * 210.02971 * 1 2 3 19 19 H 1.08003 * 126.04107 * 359.92941 * 3 2 1 20 20 H 0.97002 * 120.00008 * 359.97438 * 5 4 3 21 21 H 0.97001 * 120.00152 * 180.02562 * 5 4 3 22 22 H 0.97003 * 119.99884 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3034 1.0910 0.0000 4 6 3.6416 0.6510 0.0006 5 7 4.7709 1.4687 0.0003 6 7 3.6419 -0.6636 0.0015 7 7 2.3113 -1.1015 0.0061 8 6 1.8913 -2.4076 0.0125 9 1 0.8357 -2.6353 0.0134 10 6 2.8242 -3.4372 0.0178 11 7 4.1081 -3.1601 0.0172 12 14 2.2524 -5.2155 0.0273 13 1 0.7681 -5.2582 0.0270 14 1 2.7673 -5.9073 -1.1816 15 1 2.7674 -5.8946 1.2433 16 1 -0.3633 -0.0005 -1.0277 17 1 -0.3633 0.8903 0.5134 18 1 -0.3633 -0.8898 0.5143 19 1 1.9727 2.1191 -0.0011 20 1 4.6711 2.4336 -0.0008 21 1 5.6564 1.0727 0.0004 22 1 4.7594 -3.8790 0.0206 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300743933.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:29 Heat of formation + Delta-G solvation = 52.274602 kcal Electronic energy + Delta-G solvation = -9294.476186 eV Core-core repulsion = 7464.239960 eV Total energy + Delta-G solvation = -1830.236226 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.075 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.24543 -35.90386 -34.48932 -32.11274 -31.02730 -27.34393 -26.33503 -21.62236 -20.86210 -18.96980 -17.47636 -16.44281 -16.13302 -15.52833 -15.50286 -14.38109 -13.65566 -13.46686 -13.26782 -12.95497 -12.69798 -12.39549 -11.99138 -11.91351 -10.72831 -10.47083 -8.98066 -8.68699 -8.37217 -6.06651 1.33132 1.40040 1.57996 1.83502 2.16102 2.65620 2.71798 3.16518 3.66920 4.46096 4.69547 4.86349 4.95483 5.12207 5.25040 5.31737 5.82951 5.96305 6.09144 6.69926 7.11753 7.25111 7.67715 8.02978 8.62937 Molecular weight = 167.08amu Principal moments of inertia in cm(-1) A = 0.059233 B = 0.018350 C = 0.014117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.595154 B = 1525.530994 C = 1982.980492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.019 4.019 3 C -0.363 4.363 4 C 0.237 3.763 5 N -0.846 5.846 6 N -0.361 5.361 7 N -0.183 5.183 8 C -0.359 4.359 9 H 0.132 0.868 10 C -0.008 4.008 11 N -0.831 5.831 12 Si 1.013 2.987 13 H -0.244 1.244 14 H -0.273 1.273 15 H -0.273 1.273 16 H 0.071 0.929 17 H 0.089 0.911 18 H 0.060 0.940 19 H 0.141 0.859 20 H 0.411 0.589 21 H 0.394 0.606 22 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.485 2.292 0.018 5.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.153 4.153 3 C -0.398 4.398 4 C -0.015 4.015 5 N -0.400 5.400 6 N -0.198 5.198 7 N 0.049 4.951 8 C -0.489 4.489 9 H 0.150 0.850 10 C -0.218 4.218 11 N -0.460 5.460 12 Si 0.833 3.167 13 H -0.166 1.166 14 H -0.198 1.198 15 H -0.198 1.198 16 H 0.090 0.910 17 H 0.108 0.892 18 H 0.079 0.921 19 H 0.159 0.841 20 H 0.241 0.759 21 H 0.221 0.779 22 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.672 1.028 0.023 3.813 hybrid contribution 0.112 0.339 -0.010 0.357 sum -3.559 1.367 0.013 3.813 Atomic orbital electron populations 1.20130 0.86231 1.02988 1.02421 1.21509 0.95851 0.86661 1.11237 1.20412 0.90436 0.98371 1.30587 1.19878 0.89173 0.90868 1.01532 1.40743 1.03333 1.06460 1.89437 1.78181 0.98050 1.08170 1.35408 1.44597 1.02083 1.04938 1.43502 1.20411 0.95257 0.78833 1.54363 0.85015 1.26764 0.94726 1.05762 0.94545 1.70444 1.01949 1.34426 1.39158 0.84621 0.79814 0.74171 0.78111 1.16646 1.19844 1.19837 0.90992 0.89190 0.92057 0.84106 0.75885 0.77883 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.19 10.05 71.24 0.72 -1.47 14 2 C -0.02 -0.95 6.92 41.12 0.28 -0.67 14 3 C -0.36 -17.53 10.74 22.18 0.24 -17.29 14 4 C 0.24 12.32 8.44 133.62 1.13 13.45 14 5 N -0.85 -33.95 9.12 -54.56 -0.50 -34.45 14 6 N -0.36 -21.90 10.42 -54.50 -0.57 -22.47 14 7 N -0.18 -10.69 3.73 -178.93 -0.67 -11.35 14 8 C -0.36 -20.09 9.95 84.02 0.84 -19.25 14 9 H 0.13 6.55 7.04 -2.91 -0.02 6.53 14 10 C -0.01 -0.45 5.50 84.93 0.47 0.02 14 11 N -0.83 -49.47 11.81 21.65 0.26 -49.21 14 12 Si 1.01 40.57 29.55 68.60 2.03 42.59 14 13 H -0.24 -8.82 7.11 99.48 0.71 -8.11 14 14 H -0.27 -10.70 7.11 99.48 0.71 -9.99 14 15 H -0.27 -10.69 7.11 99.48 0.71 -9.99 14 16 H 0.07 2.40 8.14 -2.39 -0.02 2.38 14 17 H 0.09 2.73 8.14 -2.39 -0.02 2.71 14 18 H 0.06 2.20 7.35 -2.38 -0.02 2.18 14 19 H 0.14 5.73 8.06 -2.91 -0.02 5.71 14 20 H 0.41 13.02 8.96 -92.71 -0.83 12.19 14 21 H 0.39 15.08 8.96 -92.71 -0.83 14.25 14 22 H 0.27 14.79 8.31 -92.71 -0.77 14.02 14 Total: -1.00 -72.04 202.52 3.81 -68.23 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: -0.41 Total: 31.87 kcal Atomic # 6 Polarization: -28.89 SS G_CDS: 3.67 Total: -25.22 kcal Atomic # 7 Polarization: -116.00 SS G_CDS: -1.48 Total: -117.48 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.59 kcal Total: -72.04 3.81 -68.23 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300743933.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.505 kcal (2) G-P(sol) polarization free energy of solvation -72.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds