Wall clock time and date at job start Mon Mar 30 2020 01:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28596 * 124.61726 * 2 1 4 4 C 1.31388 * 108.71659 * 179.97438 * 3 2 1 5 5 C 1.39674 * 105.89768 * 359.97438 * 4 3 2 6 6 C 1.50700 * 127.04835 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46869 * 125.00337 * 6 5 4 8 8 H 1.08002 * 120.00299 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99942 * 179.72213 * 7 6 5 10 10 N 1.31514 * 119.99698 * 0.28408 * 9 7 6 11 11 Si 1.86794 * 119.99837 * 180.27476 * 9 7 6 12 12 H 1.48504 * 109.47196 * 60.00645 * 11 9 7 13 13 H 1.48504 * 109.46887 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47679 * 300.00280 * 11 9 7 15 15 N 1.28604 * 124.61553 * 180.24006 * 2 1 3 16 16 H 1.08999 * 109.47286 * 90.02751 * 1 2 3 17 17 H 1.08998 * 109.47640 * 210.02659 * 1 2 3 18 18 H 1.09002 * 109.47484 * 330.02850 * 1 2 3 19 19 H 1.07998 * 127.05339 * 179.97438 * 4 3 2 20 20 H 1.09004 * 109.47210 * 5.00631 * 6 5 4 21 21 H 1.08994 * 109.47551 * 245.00283 * 6 5 4 22 22 H 0.97005 * 119.99651 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1955 1.0583 0.0000 4 6 3.4591 0.6983 0.0006 5 6 3.4591 -0.6984 0.0015 6 6 4.6618 -1.6064 0.0019 7 6 4.5718 -2.5587 1.1664 8 1 3.7279 -2.5115 1.8387 9 6 5.5638 -3.4945 1.3699 10 7 6.5912 -3.5523 0.5510 11 14 5.4484 -4.6800 2.8089 12 1 4.2105 -5.4908 2.6843 13 1 6.6312 -5.5780 2.8065 14 1 5.4120 -3.9134 4.0803 15 7 2.1955 -1.0584 -0.0044 16 1 -0.3634 -0.0005 -1.0276 17 1 -0.3634 -0.8897 0.5142 18 1 -0.3634 0.8902 0.5134 19 1 4.3211 1.3490 0.0003 20 1 5.5687 -1.0082 0.0910 21 1 4.6900 -2.1726 -0.9290 22 1 7.2893 -4.2104 0.6945 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306427127.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:27 Heat of formation + Delta-G solvation = 100.406881 kcal Electronic energy + Delta-G solvation = -9036.472885 eV Core-core repulsion = 7208.323832 eV Total energy + Delta-G solvation = -1828.149053 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.075 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -42.68648 -34.01337 -32.61226 -31.62342 -29.03839 -26.24127 -23.29220 -21.46597 -19.85408 -16.57413 -16.38915 -15.85377 -14.57079 -14.07990 -12.98405 -12.86086 -12.45948 -12.00309 -11.74407 -11.08004 -10.75513 -10.43325 -9.98743 -9.68409 -9.48123 -9.30308 -8.43516 -8.11465 -6.00021 -4.01159 2.54716 3.00526 3.36265 3.36909 3.40355 3.46864 4.49454 4.77671 5.24699 5.35931 5.44699 5.51438 5.91019 6.27108 6.73816 7.10001 7.46693 7.55678 7.64171 7.97045 8.35493 9.00992 9.17566 9.61387 11.10945 Molecular weight = 167.08amu Principal moments of inertia in cm(-1) A = 0.079394 B = 0.012526 C = 0.011373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 352.585511 B = 2234.822835 C = 2461.438153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.183 5.183 3 N -0.311 5.311 4 C -0.042 4.042 5 C 0.053 3.947 6 C 0.095 3.905 7 C -0.506 4.506 8 H 0.056 0.944 9 C 0.057 3.943 10 N -0.897 5.897 11 Si 0.897 3.103 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.277 1.277 15 N -0.296 5.296 16 H 0.079 0.921 17 H 0.096 0.904 18 H 0.092 0.908 19 H 0.190 0.810 20 H 0.042 0.958 21 H 0.039 0.961 22 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.069 5.559 -0.614 9.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.083 5.083 3 N -0.153 5.153 4 C -0.224 4.224 5 C -0.110 4.110 6 C 0.056 3.944 7 C -0.545 4.545 8 H 0.075 0.925 9 C -0.144 4.144 10 N -0.536 5.536 11 Si 0.725 3.275 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.203 1.203 15 N -0.137 5.137 16 H 0.097 0.903 17 H 0.114 0.886 18 H 0.111 0.889 19 H 0.207 0.793 20 H 0.060 0.940 21 H 0.057 0.943 22 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.340 5.472 -0.655 10.845 hybrid contribution 0.870 -0.622 0.787 1.328 sum -8.470 4.849 0.132 9.761 Atomic orbital electron populations 1.21836 0.71816 1.04881 1.03842 1.47839 1.08219 1.00011 1.52213 1.73813 1.04323 1.16708 1.20455 1.24638 0.93820 0.95732 1.08256 1.24236 0.93489 0.93822 0.99483 1.17747 0.86233 0.92020 0.98381 1.21013 1.06741 1.15871 1.10902 0.92523 1.24974 0.95306 0.97445 0.96634 1.69936 1.10443 1.35937 1.37300 0.86571 0.77398 0.80814 0.82716 1.20235 1.21250 1.20297 1.74153 1.04437 1.14065 1.21042 0.90292 0.88582 0.88920 0.79324 0.93955 0.94309 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.46 11.57 59.85 0.69 2.15 14 2 N -0.18 -3.53 4.35 -16.64 -0.07 -3.61 14 3 N -0.31 -6.13 12.05 30.68 0.37 -5.76 14 4 C -0.04 -0.86 12.15 -17.21 -0.21 -1.07 14 5 C 0.05 1.25 6.55 -82.25 -0.54 0.71 14 6 C 0.10 2.51 5.57 -29.03 -0.16 2.35 14 7 C -0.51 -14.60 9.09 -34.44 -0.31 -14.92 14 8 H 0.06 1.66 7.74 -52.49 -0.41 1.25 14 9 C 0.06 1.65 5.46 -17.82 -0.10 1.55 14 10 N -0.90 -26.57 13.29 55.43 0.74 -25.83 14 11 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 14 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 14 13 H -0.29 -6.88 7.11 56.52 0.40 -6.47 14 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 14 15 N -0.30 -6.80 12.04 33.71 0.41 -6.39 14 16 H 0.08 0.81 8.14 -51.93 -0.42 0.39 14 17 H 0.10 1.07 8.14 -51.93 -0.42 0.65 14 18 H 0.09 0.92 8.14 -51.93 -0.42 0.50 14 19 H 0.19 3.17 8.06 -52.49 -0.42 2.74 14 20 H 0.04 1.11 8.14 -51.93 -0.42 0.69 14 21 H 0.04 1.08 8.14 -51.93 -0.42 0.66 14 22 H 0.26 7.35 8.31 -40.82 -0.34 7.01 14 LS Contribution 207.78 15.07 3.13 3.13 Total: -1.00 -32.78 207.78 -3.15 -35.94 By element: Atomic # 1 Polarization: -3.12 SS G_CDS: -2.08 Total: -5.20 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -0.63 Total: -9.22 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: 1.44 Total: -41.59 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 3.13 Total: 3.13 kcal Total: -32.78 -3.15 -35.94 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306427127.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.345 kcal (2) G-P(sol) polarization free energy of solvation -32.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds