Wall clock time and date at job start Mon Mar 30 2020 01:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28596 * 124.61726 * 2 1 4 4 C 1.31388 * 108.71659 * 179.97438 * 3 2 1 5 5 C 1.39674 * 105.89768 * 359.97438 * 4 3 2 6 6 C 1.50700 * 127.04835 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46869 * 125.00337 * 6 5 4 8 8 H 1.08002 * 120.00299 * 0.02562 * 7 6 5 9 9 C 1.37884 * 119.99942 * 179.72213 * 7 6 5 10 10 N 1.31514 * 119.99698 * 0.28408 * 9 7 6 11 11 Si 1.86794 * 119.99837 * 180.27476 * 9 7 6 12 12 H 1.48504 * 109.47196 * 60.00645 * 11 9 7 13 13 H 1.48504 * 109.46887 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47679 * 300.00280 * 11 9 7 15 15 N 1.28604 * 124.61553 * 180.24006 * 2 1 3 16 16 H 1.08999 * 109.47286 * 90.02751 * 1 2 3 17 17 H 1.08998 * 109.47640 * 210.02659 * 1 2 3 18 18 H 1.09002 * 109.47484 * 330.02850 * 1 2 3 19 19 H 1.07998 * 127.05339 * 179.97438 * 4 3 2 20 20 H 1.09004 * 109.47210 * 5.00631 * 6 5 4 21 21 H 1.08994 * 109.47551 * 245.00283 * 6 5 4 22 22 H 0.97005 * 119.99651 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1955 1.0583 0.0000 4 6 3.4591 0.6983 0.0006 5 6 3.4591 -0.6984 0.0015 6 6 4.6618 -1.6064 0.0019 7 6 4.5718 -2.5587 1.1664 8 1 3.7279 -2.5115 1.8387 9 6 5.5638 -3.4945 1.3699 10 7 6.5912 -3.5523 0.5510 11 14 5.4484 -4.6800 2.8089 12 1 4.2105 -5.4908 2.6843 13 1 6.6312 -5.5780 2.8065 14 1 5.4120 -3.9134 4.0803 15 7 2.1955 -1.0584 -0.0044 16 1 -0.3634 -0.0005 -1.0276 17 1 -0.3634 -0.8897 0.5142 18 1 -0.3634 0.8902 0.5134 19 1 4.3211 1.3490 0.0003 20 1 5.5687 -1.0082 0.0910 21 1 4.6900 -2.1726 -0.9290 22 1 7.2893 -4.2104 0.6945 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306427127.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:26 Heat of formation + Delta-G solvation = 77.025788 kcal Electronic energy + Delta-G solvation = -9037.486765 eV Core-core repulsion = 7208.323832 eV Total energy + Delta-G solvation = -1829.162934 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.075 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -44.29215 -35.87234 -34.36754 -33.33382 -30.84538 -27.83616 -25.28210 -23.02896 -21.59211 -18.48691 -18.02566 -17.50606 -16.58547 -15.53253 -14.72372 -14.40176 -13.88138 -13.66207 -13.50099 -12.98333 -12.67220 -12.28494 -11.80064 -11.58435 -11.49051 -11.02412 -10.58090 -9.81276 -8.18535 -6.28269 0.95998 1.41511 1.44643 1.52308 1.66751 1.71928 2.44462 3.13999 3.39387 4.16578 4.35144 4.41558 4.57502 4.65680 5.00668 5.30680 5.45316 5.58096 5.76983 5.98217 6.20123 6.79275 7.38471 7.53336 8.92220 Molecular weight = 167.08amu Principal moments of inertia in cm(-1) A = 0.079394 B = 0.012526 C = 0.011373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 352.585511 B = 2234.822835 C = 2461.438153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.172 5.172 3 N -0.304 5.304 4 C -0.042 4.042 5 C 0.019 3.981 6 C 0.104 3.896 7 C -0.527 4.527 8 H 0.047 0.953 9 C 0.008 3.992 10 N -0.926 5.926 11 Si 0.964 3.036 12 H -0.273 1.273 13 H -0.277 1.277 14 H -0.269 1.269 15 N -0.318 5.318 16 H 0.105 0.895 17 H 0.108 0.892 18 H 0.122 0.878 19 H 0.218 0.782 20 H 0.036 0.964 21 H 0.012 0.988 22 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.185 5.903 0.133 10.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.074 5.074 3 N -0.147 5.147 4 C -0.223 4.223 5 C -0.143 4.143 6 C 0.065 3.935 7 C -0.566 4.566 8 H 0.065 0.935 9 C -0.190 4.190 10 N -0.566 5.566 11 Si 0.789 3.211 12 H -0.198 1.198 13 H -0.202 1.202 14 H -0.195 1.195 15 N -0.161 5.161 16 H 0.123 0.877 17 H 0.126 0.874 18 H 0.140 0.860 19 H 0.235 0.765 20 H 0.054 0.946 21 H 0.030 0.970 22 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.463 5.828 0.088 11.977 hybrid contribution 1.097 -0.683 0.511 1.389 sum -9.366 5.146 0.599 10.703 Atomic orbital electron populations 1.22465 0.68181 1.07011 1.06271 1.48500 1.10098 0.98955 1.49806 1.73824 1.04019 1.16621 1.20243 1.25000 0.95070 0.94602 1.07608 1.23832 0.93090 0.94961 1.02421 1.17426 0.87702 0.91928 0.96456 1.21255 1.06679 1.16998 1.11635 0.93502 1.25821 0.94781 0.99038 0.99361 1.70040 1.11045 1.36696 1.38852 0.85515 0.77703 0.78550 0.79331 1.19799 1.20197 1.19454 1.74036 1.04703 1.15903 1.21440 0.87700 0.87368 0.85999 0.76515 0.94605 0.96958 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.15 11.57 127.77 1.48 3.63 14 2 N -0.17 -6.27 4.35 -206.56 -0.90 -7.17 14 3 N -0.30 -11.36 12.05 -56.86 -0.69 -12.04 14 4 C -0.04 -1.66 12.15 85.11 1.03 -0.63 14 5 C 0.02 0.89 6.55 42.97 0.28 1.17 14 6 C 0.10 5.63 5.57 29.10 0.16 5.80 14 7 C -0.53 -30.84 9.09 25.60 0.23 -30.60 14 8 H 0.05 2.77 7.74 -2.91 -0.02 2.74 14 9 C 0.01 0.49 5.46 84.66 0.46 0.95 14 10 N -0.93 -55.36 13.29 21.45 0.28 -55.08 14 11 Si 0.96 44.85 29.54 68.60 2.03 46.88 14 12 H -0.27 -12.43 7.11 99.48 0.71 -11.72 14 13 H -0.28 -12.35 7.11 99.48 0.71 -11.64 14 14 H -0.27 -12.12 7.11 99.48 0.71 -11.42 14 15 N -0.32 -14.41 12.04 -47.25 -0.57 -14.98 14 16 H 0.10 1.80 8.14 -2.39 -0.02 1.78 14 17 H 0.11 2.12 8.14 -2.39 -0.02 2.10 14 18 H 0.12 1.96 8.14 -2.39 -0.02 1.94 14 19 H 0.22 6.94 8.06 -2.91 -0.02 6.91 14 20 H 0.04 1.94 8.14 -2.38 -0.02 1.92 14 21 H 0.01 0.72 8.14 -2.39 -0.02 0.70 14 22 H 0.27 14.95 8.31 -92.70 -0.77 14.17 14 Total: -1.00 -69.62 207.78 5.02 -64.60 By element: Atomic # 1 Polarization: -3.72 SS G_CDS: 1.21 Total: -2.51 kcal Atomic # 6 Polarization: -23.34 SS G_CDS: 3.65 Total: -19.69 kcal Atomic # 7 Polarization: -87.41 SS G_CDS: -1.87 Total: -89.28 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -69.62 5.02 -64.60 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306427127.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.626 kcal (2) G-P(sol) polarization free energy of solvation -69.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds