Wall clock time and date at job start Mon Mar 30 2020 01:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99977 * 2 1 4 4 H 1.48500 * 109.47168 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47144 * 300.00194 * 3 2 1 6 6 H 1.48502 * 109.47065 * 59.99715 * 3 2 1 7 7 C 1.38806 * 120.00385 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00469 * 191.96767 * 7 2 1 9 9 N 1.36940 * 119.99733 * 11.96192 * 7 2 1 10 10 C 1.45659 * 119.49196 * 204.57596 * 9 7 2 11 11 C 1.51595 * 111.75075 * 218.79725 * 10 9 7 12 12 C 1.51346 * 113.19704 * 303.62862 * 11 10 9 13 13 C 1.52216 * 112.81573 * 48.13907 * 12 11 10 14 14 H 1.09001 * 115.21066 * 125.64392 * 13 12 11 15 15 C 1.53586 * 116.45870 * 268.90366 * 13 12 11 16 16 C 1.45908 * 119.49260 * 24.59318 * 9 7 2 17 17 H 1.09000 * 114.84582 * 23.10391 * 16 9 7 18 18 H 0.97001 * 120.00013 * 0.02562 * 1 2 3 19 19 H 1.08993 * 109.02949 * 98.20688 * 10 9 7 20 20 H 1.09009 * 108.96299 * 339.33563 * 10 9 7 21 21 H 1.09006 * 108.73979 * 182.67739 * 11 10 9 22 22 H 1.08998 * 108.64396 * 64.52381 * 11 10 9 23 23 H 1.08998 * 108.81594 * 287.27628 * 12 11 10 24 24 H 1.08999 * 108.81073 * 168.99830 * 12 11 10 25 25 H 1.08993 * 117.50798 * 2.81132 * 15 13 12 26 26 H 1.09001 * 117.51130 * 217.71562 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0727 -1.2121 0.1945 9 7 1.3479 -2.3752 -0.2447 10 6 1.8941 -3.6267 0.2624 11 6 1.7205 -4.7588 -0.7307 12 6 0.2798 -4.9775 -1.1395 13 6 -0.4257 -3.6863 -1.5294 14 1 -0.8909 -3.6908 -2.5151 15 6 -1.1618 -2.9424 -0.4052 16 6 0.1061 -2.3525 -1.0104 17 1 -0.0144 -1.4871 -1.6621 18 1 -0.4850 0.8401 -0.0004 19 1 1.3847 -3.8867 1.1902 20 1 2.9566 -3.4926 0.4663 21 1 2.1011 -5.6776 -0.2844 22 1 2.3070 -4.5338 -1.6215 23 1 -0.2563 -5.4336 -0.3073 24 1 0.2552 -5.6615 -1.9878 25 1 -1.0941 -3.3563 0.6008 26 1 -2.1087 -2.4635 -0.6544 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306479539.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:47 Heat of formation + Delta-G solvation = 20.872093 kcal Electronic energy + Delta-G solvation = -9823.726649 eV Core-core repulsion = 8095.669051 eV Total energy + Delta-G solvation = -1728.057597 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.92986 -35.33992 -34.09928 -32.14484 -27.66064 -25.22971 -23.72746 -22.04482 -19.88934 -18.31675 -16.94813 -16.34207 -15.53233 -15.28629 -14.69654 -14.28081 -14.09892 -13.09626 -12.82124 -12.75621 -12.23402 -12.14515 -11.85742 -11.66595 -11.40779 -11.19453 -10.61920 -10.25218 -8.58484 -7.83452 -5.33205 1.46653 1.47710 1.58717 2.49420 3.16503 3.43417 3.58160 4.11775 4.19480 4.31326 4.46832 4.66414 4.73059 4.84785 5.02533 5.08741 5.14743 5.22338 5.34960 5.48334 5.53743 5.59037 5.73277 6.34984 7.16915 7.88627 8.30332 9.19412 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.074892 B = 0.017429 C = 0.015039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 373.779707 B = 1606.095627 C = 1861.339806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.047 4.047 3 Si 0.972 3.028 4 H -0.266 1.266 5 H -0.288 1.288 6 H -0.291 1.291 7 C -0.280 4.280 8 H 0.073 0.927 9 N -0.584 5.584 10 C 0.144 3.856 11 C -0.122 4.122 12 C -0.075 4.075 13 C -0.192 4.192 14 H 0.105 0.895 15 C -0.202 4.202 16 C 0.189 3.811 17 H 0.076 0.924 18 H 0.250 0.750 19 H -0.002 1.002 20 H 0.052 0.948 21 H 0.089 0.911 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.083 0.917 25 H 0.061 0.939 26 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.512 -6.960 -2.469 7.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.243 4.243 3 Si 0.800 3.200 4 H -0.191 1.191 5 H -0.215 1.215 6 H -0.218 1.218 7 C -0.410 4.410 8 H 0.091 0.909 9 N -0.303 5.303 10 C 0.019 3.981 11 C -0.160 4.160 12 C -0.112 4.112 13 C -0.212 4.212 14 H 0.123 0.877 15 C -0.242 4.242 16 C 0.079 3.921 17 H 0.094 0.906 18 H 0.059 0.941 19 H 0.016 0.984 20 H 0.071 0.929 21 H 0.107 0.893 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.102 0.898 25 H 0.079 0.921 26 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.478 -6.850 -2.444 7.422 hybrid contribution -0.033 1.172 0.309 1.212 sum 1.445 -5.678 -2.135 6.236 Atomic orbital electron populations 1.70204 1.06373 1.25554 1.55046 1.25838 0.96332 1.01445 1.00717 0.85139 0.78496 0.79550 0.76812 1.19081 1.21500 1.21837 1.19638 0.91936 0.85302 1.44121 0.90949 1.43321 1.23893 1.03044 1.60073 1.20455 0.96902 0.86225 0.94552 1.21102 0.97257 0.98290 0.99392 1.20431 0.94844 0.94733 1.01194 1.22905 1.05147 0.95450 0.97708 0.87710 1.23069 0.98616 1.06715 0.95842 1.20071 0.85111 0.91866 0.95027 0.90587 0.94101 0.98437 0.92910 0.89298 0.92640 0.92589 0.89831 0.92050 0.90744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.28 10.92 21.65 0.24 -55.04 15 2 C -0.05 -2.69 5.12 84.86 0.43 -2.26 15 3 Si 0.97 45.38 29.57 68.60 2.03 47.41 15 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 15 5 H -0.29 -13.34 7.11 99.48 0.71 -12.63 15 6 H -0.29 -13.58 7.11 99.48 0.71 -12.88 15 7 C -0.28 -15.90 9.58 84.03 0.80 -15.09 15 8 H 0.07 3.97 7.77 -2.91 -0.02 3.95 15 9 N -0.58 -30.79 3.18 -685.94 -2.18 -32.98 15 10 C 0.14 6.24 6.27 86.08 0.54 6.78 15 11 C -0.12 -4.15 5.87 29.59 0.17 -3.97 15 12 C -0.07 -2.46 5.81 29.79 0.17 -2.29 15 13 C -0.19 -7.67 6.25 -10.96 -0.07 -7.74 15 14 H 0.10 3.75 8.14 -2.39 -0.02 3.73 15 15 C -0.20 -9.30 10.00 30.58 0.31 -9.00 15 16 C 0.19 9.57 4.39 44.79 0.20 9.77 15 17 H 0.08 4.34 6.88 -2.39 -0.02 4.32 15 18 H 0.25 14.38 8.31 -92.71 -0.77 13.61 15 19 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 15 20 H 0.05 2.20 7.86 -2.38 -0.02 2.18 15 21 H 0.09 2.40 8.14 -2.38 -0.02 2.38 15 22 H 0.05 1.90 8.14 -2.39 -0.02 1.88 15 23 H 0.06 1.79 8.04 -2.39 -0.02 1.77 15 24 H 0.08 2.24 8.14 -2.39 -0.02 2.22 15 25 H 0.06 2.93 8.14 -2.39 -0.02 2.91 15 26 H 0.07 3.35 8.14 -2.39 -0.02 3.33 15 Total: -1.00 -62.65 214.14 3.78 -58.87 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: 1.14 Total: 5.54 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: 2.56 Total: -23.81 kcal Atomic # 7 Polarization: -86.07 SS G_CDS: -1.95 Total: -88.02 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -62.65 3.78 -58.87 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306479539.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.744 kcal (2) G-P(sol) polarization free energy of solvation -62.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds