Wall clock time and date at job start Mon Mar 30 2020 01:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86805 * 119.99841 * 2 1 4 4 H 1.48497 * 109.47143 * 274.98711 * 3 2 1 5 5 H 1.48496 * 109.47139 * 34.98718 * 3 2 1 6 6 H 1.48507 * 109.47020 * 154.98759 * 3 2 1 7 7 C 1.38817 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00109 * 187.06023 * 7 2 1 9 9 N 1.36935 * 119.99945 * 7.05738 * 7 2 1 10 10 C 1.47111 * 125.58055 * 354.75678 * 9 7 2 11 11 C 1.54558 * 107.37482 * 179.07550 * 10 9 7 12 12 C 1.53933 * 102.74063 * 339.04013 * 11 10 9 13 13 C 1.51706 * 122.31008 * 250.71743 * 12 11 10 14 14 C 1.51687 * 122.33912 * 177.28601 * 12 11 10 15 15 C 1.47671 * 125.58478 * 174.77394 * 9 7 2 16 16 H 0.97004 * 120.00370 * 359.97438 * 1 2 3 17 17 H 1.08995 * 109.86645 * 59.62804 * 10 9 7 18 18 H 1.09003 * 109.97984 * 298.58181 * 10 9 7 19 19 H 1.08998 * 110.76207 * 220.72676 * 11 10 9 20 20 H 1.09004 * 110.91542 * 97.42033 * 11 10 9 21 21 H 1.09002 * 117.53160 * 355.62435 * 13 12 11 22 22 H 1.08998 * 117.53304 * 140.84475 * 13 12 11 23 23 H 1.09004 * 117.52813 * 219.10799 * 14 12 11 24 24 H 1.08991 * 117.53555 * 4.25762 * 14 12 11 25 25 H 1.09000 * 110.39646 * 83.87379 * 15 9 7 26 26 H 1.09004 * 110.39790 * 321.47434 * 15 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1073 -1.3947 5 1 1.5042 2.6200 0.8028 6 1 3.5965 1.4121 0.5920 7 6 2.0102 -1.2022 0.0005 8 1 3.0841 -1.2057 0.1155 9 7 1.3334 -2.3836 -0.1446 10 6 -0.1293 -2.5309 -0.2003 11 6 -0.4348 -4.0336 -0.3938 12 6 0.8856 -4.5773 -0.9684 13 6 1.0178 -5.0272 -2.4112 14 6 1.0938 -6.0490 -1.2713 15 6 1.9521 -3.7186 -0.2706 16 1 -0.4851 0.8400 0.0004 17 1 -0.5272 -1.9610 -1.0399 18 1 -0.5747 -2.1792 0.7303 19 1 -1.2512 -4.1738 -1.1023 20 1 -0.6663 -4.5094 0.5592 21 1 0.1169 -5.0229 -3.0248 22 1 1.9438 -4.7836 -2.9321 23 1 2.0698 -6.4772 -1.0428 24 1 0.2433 -6.7167 -1.1345 25 1 2.1824 -4.1250 0.7143 26 1 2.8541 -3.6633 -0.8801 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306731971.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:14 Heat of formation + Delta-G solvation = 28.829983 kcal Electronic energy + Delta-G solvation = -9618.585641 eV Core-core repulsion = 7890.873124 eV Total energy + Delta-G solvation = -1727.712517 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.94364 -36.30521 -33.45234 -30.73784 -28.00412 -25.68690 -23.22812 -22.09777 -20.02880 -18.74324 -16.78104 -16.02039 -15.79769 -15.73657 -14.82850 -13.89746 -13.65468 -13.00429 -12.92959 -12.47684 -12.39369 -12.25715 -12.00686 -11.87498 -11.60729 -10.99276 -10.69978 -10.52031 -8.90248 -7.87269 -5.21979 1.44306 1.47244 1.56216 2.48228 2.97357 3.32259 3.60060 3.73694 4.06014 4.18609 4.24940 4.66431 4.76543 4.82892 4.91829 5.01377 5.12781 5.20949 5.23331 5.34173 5.43870 5.66341 5.76108 6.18221 7.08606 7.76070 8.42887 9.24045 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.091640 B = 0.013964 C = 0.013019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 305.470952 B = 2004.698171 C = 2150.179417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.069 4.069 3 Si 0.982 3.018 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.266 1.266 7 C -0.247 4.247 8 H 0.082 0.918 9 N -0.629 5.629 10 C 0.187 3.813 11 C -0.095 4.095 12 C -0.160 4.160 13 C -0.164 4.164 14 C -0.137 4.137 15 C 0.166 3.834 16 H 0.247 0.753 17 H 0.010 0.990 18 H 0.002 0.998 19 H 0.077 0.923 20 H 0.073 0.927 21 H 0.099 0.901 22 H 0.091 0.909 23 H 0.106 0.894 24 H 0.113 0.887 25 H 0.025 0.975 26 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.474 -9.463 -2.638 9.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.261 4.261 3 Si 0.810 3.190 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.191 1.191 7 C -0.376 4.376 8 H 0.100 0.900 9 N -0.356 5.356 10 C 0.062 3.938 11 C -0.133 4.133 12 C -0.161 4.161 13 C -0.200 4.200 14 C -0.174 4.174 15 C 0.041 3.959 16 H 0.057 0.943 17 H 0.028 0.972 18 H 0.021 0.979 19 H 0.095 0.905 20 H 0.091 0.909 21 H 0.118 0.882 22 H 0.109 0.891 23 H 0.124 0.876 24 H 0.131 0.869 25 H 0.043 0.957 26 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.445 -9.252 -2.609 9.721 hybrid contribution 0.197 1.300 0.138 1.322 sum 1.642 -7.952 -2.471 8.487 Atomic orbital electron populations 1.70219 1.06462 1.25344 1.58033 1.25744 0.96677 1.01235 1.02489 0.85010 0.77831 0.78846 0.77358 1.21294 1.21932 1.19079 1.19501 0.91694 0.83975 1.42396 0.90006 1.44855 1.02582 1.02175 1.85939 1.20917 0.83818 0.91932 0.97166 1.22142 0.95594 0.95083 1.00496 1.21602 0.96856 0.97770 0.99901 1.22824 1.03250 1.03526 0.90440 1.22813 1.04095 0.89760 1.00748 1.20988 0.94083 0.84489 0.96367 0.94350 0.97186 0.97932 0.90476 0.90869 0.88250 0.89073 0.87550 0.86903 0.95702 0.94373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.58 10.35 21.65 0.22 -59.36 15 2 C -0.07 -4.07 5.48 84.86 0.46 -3.60 15 3 Si 0.98 47.11 29.56 68.60 2.03 49.14 15 4 H -0.29 -13.49 7.11 99.48 0.71 -12.78 15 5 H -0.29 -14.00 7.11 99.48 0.71 -13.30 15 6 H -0.27 -12.00 7.11 99.48 0.71 -11.30 15 7 C -0.25 -14.56 10.26 84.04 0.86 -13.70 15 8 H 0.08 4.60 7.84 -2.91 -0.02 4.57 15 9 N -0.63 -34.59 3.40 -693.09 -2.36 -36.95 15 10 C 0.19 9.87 5.40 86.79 0.47 10.33 15 11 C -0.10 -3.71 6.79 31.44 0.21 -3.50 15 12 C -0.16 -5.75 2.30 -52.50 -0.12 -5.87 15 13 C -0.16 -4.86 10.35 30.26 0.31 -4.55 15 14 C -0.14 -3.50 10.35 30.25 0.31 -3.19 15 15 C 0.17 7.24 7.09 86.38 0.61 7.86 15 16 H 0.25 14.93 8.31 -92.71 -0.77 14.16 15 17 H 0.01 0.58 7.29 -2.39 -0.02 0.57 15 18 H 0.00 0.14 7.60 -2.39 -0.02 0.13 15 19 H 0.08 2.68 8.14 -2.39 -0.02 2.66 15 20 H 0.07 2.63 8.14 -2.39 -0.02 2.61 15 21 H 0.10 2.73 8.14 -2.39 -0.02 2.72 15 22 H 0.09 2.68 8.14 -2.39 -0.02 2.66 15 23 H 0.11 2.40 8.14 -2.39 -0.02 2.38 15 24 H 0.11 2.41 8.14 -2.39 -0.02 2.39 15 25 H 0.03 1.08 8.14 -2.39 -0.02 1.06 15 26 H 0.04 1.62 8.14 -2.38 -0.02 1.60 15 Total: -1.00 -67.43 218.82 4.15 -63.27 By element: Atomic # 1 Polarization: -1.01 SS G_CDS: 1.14 Total: 0.13 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: 3.13 Total: -16.23 kcal Atomic # 7 Polarization: -94.18 SS G_CDS: -2.14 Total: -96.31 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -67.43 4.15 -63.27 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306731971.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.102 kcal (2) G-P(sol) polarization free energy of solvation -67.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds