Wall clock time and date at job start Mon Mar 30 2020 02:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48503 * 109.47294 * 269.99778 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99638 * 3 2 1 6 6 H 1.48496 * 109.47166 * 149.99470 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.50700 * 109.46769 * 179.72432 * 10 9 7 12 12 C 1.34326 * 126.16942 * 95.00287 * 11 10 9 13 13 O 1.34749 * 107.11507 * 179.97438 * 12 11 10 14 14 C 1.33963 * 107.75564 * 359.97438 * 13 12 11 15 15 N 1.30255 * 108.76181 * 359.72866 * 14 13 12 16 16 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 17 17 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 18 18 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 19 19 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 20 20 H 1.07999 * 126.43916 * 0.02562 * 12 11 10 21 21 H 1.08003 * 125.61960 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0785 -4.8022 0.0126 12 6 0.6357 -5.4716 -1.0644 13 8 -0.2210 -6.4128 -0.6217 14 6 -0.2899 -6.3077 0.7120 15 7 0.4960 -5.3430 1.0973 16 1 -0.4850 0.8401 -0.0004 17 1 0.3555 -2.3880 0.0005 18 1 2.6849 -3.7190 -0.8822 19 1 2.6842 -3.7101 0.8977 20 1 0.9145 -5.2901 -2.0919 21 1 -0.8935 -6.9246 1.3612 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306918552.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:05 Heat of formation + Delta-G solvation = 36.464356 kcal Electronic energy + Delta-G solvation = -9059.606292 eV Core-core repulsion = 7130.965821 eV Total energy + Delta-G solvation = -1928.640472 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.064 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -42.93311 -35.38558 -33.78438 -31.38898 -29.40853 -25.73332 -22.78041 -22.36309 -20.61738 -17.52828 -16.79034 -16.14411 -14.84879 -14.59322 -14.00679 -13.29690 -13.18909 -12.14819 -11.64361 -11.02391 -10.80553 -10.71175 -10.17687 -10.05126 -9.74571 -8.88462 -8.55017 -6.92302 -5.74264 -3.04134 1.83382 3.07714 3.20422 3.45653 3.50546 3.52838 4.50627 4.64394 5.35537 5.41649 5.61907 6.01152 6.14108 6.20735 6.50515 6.70008 6.74856 7.70625 8.11379 8.43116 9.54733 10.10356 10.46515 11.48600 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.117168 B = 0.010526 C = 0.010284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 238.915277 B = 2659.513266 C = 2722.135915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.242 4.242 8 H 0.073 0.927 9 N -0.726 5.726 10 C 0.227 3.773 11 C -0.004 4.004 12 C -0.071 4.071 13 O -0.214 6.214 14 C 0.153 3.847 15 N -0.473 5.473 16 H 0.255 0.745 17 H 0.385 0.615 18 H 0.037 0.963 19 H 0.037 0.963 20 H 0.214 0.786 21 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.617 -10.899 -1.465 11.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.372 4.372 8 H 0.091 0.909 9 N -0.371 5.371 10 C 0.099 3.901 11 C -0.124 4.124 12 C -0.142 4.142 13 O -0.100 6.100 14 C -0.074 4.074 15 N -0.203 5.203 16 H 0.065 0.935 17 H 0.219 0.781 18 H 0.054 0.946 19 H 0.055 0.945 20 H 0.231 0.769 21 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 0.825 -10.623 -0.853 10.689 hybrid contribution -0.083 0.720 -0.606 0.945 sum 0.742 -9.903 -1.460 10.037 Atomic orbital electron populations 1.69686 1.05199 1.25692 1.57504 1.24769 0.95539 0.97759 1.02854 0.86139 0.78637 0.83613 0.77488 1.21681 1.21747 1.20671 1.19246 0.91110 0.83859 1.43026 0.90900 1.42316 1.05990 0.99279 1.89516 1.18994 0.90259 0.81685 0.99141 1.22248 1.02050 1.00335 0.87740 1.24844 0.95960 0.92206 1.01185 1.84433 1.52213 1.48337 1.25023 1.28037 1.00720 0.98750 0.79846 1.70388 1.09381 1.08340 1.32163 0.93476 0.78100 0.94558 0.94489 0.76944 0.73933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.08 13.06 55.49 0.72 -28.36 14 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 14 3 Si 0.91 22.75 29.55 -169.99 -5.02 17.73 14 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 14 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 14 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 14 7 C -0.24 -6.96 9.99 -15.06 -0.15 -7.11 14 8 H 0.07 2.00 7.83 -52.49 -0.41 1.59 14 9 N -0.73 -19.53 5.59 -61.09 -0.34 -19.87 14 10 C 0.23 4.94 6.80 -5.19 -0.04 4.90 14 11 C 0.00 -0.08 6.47 -82.81 -0.54 -0.62 14 12 C -0.07 -1.14 12.08 29.35 0.35 -0.79 14 13 O -0.21 -3.20 10.78 5.38 0.06 -3.15 14 14 C 0.15 2.20 13.23 52.09 0.69 2.89 14 15 N -0.47 -8.99 11.29 -11.18 -0.13 -9.11 14 16 H 0.26 7.65 8.31 -40.82 -0.34 7.31 14 17 H 0.39 11.12 7.66 -40.82 -0.31 10.80 14 18 H 0.04 0.73 8.14 -51.93 -0.42 0.31 14 19 H 0.04 0.83 8.14 -51.93 -0.42 0.41 14 20 H 0.21 2.71 8.06 -52.49 -0.42 2.28 14 21 H 0.24 2.10 8.06 -52.48 -0.42 1.68 14 LS Contribution 201.87 15.07 3.04 3.04 Total: -1.00 -33.62 201.87 -2.99 -36.61 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -1.55 Total: 4.30 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: 0.23 Total: -1.20 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: 0.26 Total: -57.34 kcal Atomic # 8 Polarization: -3.20 SS G_CDS: 0.06 Total: -3.15 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 3.04 Total: 3.04 kcal Total: -33.62 -2.99 -36.61 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306918552.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.079 kcal (2) G-P(sol) polarization free energy of solvation -33.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds