Wall clock time and date at job start Mon Mar 30 2020 02:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48503 * 109.47294 * 269.99778 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99638 * 3 2 1 6 6 H 1.48496 * 109.47166 * 149.99470 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 C 1.50700 * 109.46769 * 179.72432 * 10 9 7 12 12 C 1.34326 * 126.16942 * 95.00287 * 11 10 9 13 13 O 1.34749 * 107.11507 * 179.97438 * 12 11 10 14 14 C 1.33963 * 107.75564 * 359.97438 * 13 12 11 15 15 N 1.30255 * 108.76181 * 359.72866 * 14 13 12 16 16 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 17 17 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 18 18 H 1.09004 * 109.46963 * 299.72226 * 10 9 7 19 19 H 1.08994 * 109.47567 * 59.72378 * 10 9 7 20 20 H 1.07999 * 126.43916 * 0.02562 * 12 11 10 21 21 H 1.08003 * 125.61960 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 6 1.0785 -4.8022 0.0126 12 6 0.6357 -5.4716 -1.0644 13 8 -0.2210 -6.4128 -0.6217 14 6 -0.2899 -6.3077 0.7120 15 7 0.4960 -5.3430 1.0973 16 1 -0.4850 0.8401 -0.0004 17 1 0.3555 -2.3880 0.0005 18 1 2.6849 -3.7190 -0.8822 19 1 2.6842 -3.7101 0.8977 20 1 0.9145 -5.2901 -2.0919 21 1 -0.8935 -6.9246 1.3612 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306918552.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:05 Heat of formation + Delta-G solvation = 8.939452 kcal Electronic energy + Delta-G solvation = -9060.799862 eV Core-core repulsion = 7130.965821 eV Total energy + Delta-G solvation = -1929.834041 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.064 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -44.18032 -37.08608 -35.43313 -33.30016 -31.00048 -27.54497 -24.76287 -23.56651 -22.05882 -19.43462 -18.26052 -17.43686 -16.61622 -16.01322 -15.62178 -15.16177 -15.00847 -13.81488 -13.39352 -12.89895 -12.75918 -12.22325 -12.12209 -11.81497 -11.45674 -11.00003 -9.85925 -9.06748 -7.96970 -5.28220 0.62312 1.47591 1.50719 1.59147 1.75542 2.06802 2.57250 3.33834 3.41401 3.99600 4.17187 4.20717 4.73106 4.81557 4.96214 5.11038 5.43475 5.46521 6.22983 6.85774 7.29458 8.00091 8.26614 9.27050 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.117168 B = 0.010526 C = 0.010284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 238.915277 B = 2659.513266 C = 2722.135915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.076 4.076 3 Si 0.982 3.018 4 H -0.282 1.282 5 H -0.296 1.296 6 H -0.268 1.268 7 C -0.250 4.250 8 H 0.083 0.917 9 N -0.740 5.740 10 C 0.229 3.771 11 C -0.046 4.046 12 C -0.051 4.051 13 O -0.209 6.209 14 C 0.178 3.822 15 N -0.526 5.526 16 H 0.252 0.748 17 H 0.371 0.629 18 H 0.057 0.943 19 H 0.025 0.975 20 H 0.244 0.756 21 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.928 -11.699 -1.895 11.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.268 4.268 3 Si 0.810 3.190 4 H -0.209 1.209 5 H -0.222 1.222 6 H -0.193 1.193 7 C -0.381 4.381 8 H 0.101 0.899 9 N -0.383 5.383 10 C 0.102 3.898 11 C -0.164 4.164 12 C -0.122 4.122 13 O -0.095 6.095 14 C -0.049 4.049 15 N -0.255 5.255 16 H 0.061 0.939 17 H 0.202 0.798 18 H 0.075 0.925 19 H 0.043 0.957 20 H 0.260 0.740 21 H 0.312 0.688 Dipole moment (debyes) X Y Z Total from point charges 1.184 -11.450 -1.284 11.583 hybrid contribution -0.200 0.828 -0.451 0.964 sum 0.983 -10.623 -1.735 10.808 Atomic orbital electron populations 1.69858 1.06924 1.26255 1.59283 1.25680 0.96439 1.01447 1.03273 0.85022 0.77584 0.78754 0.77651 1.20877 1.22236 1.19251 1.19714 0.91780 0.84920 1.41725 0.89944 1.42528 1.05495 1.00719 1.89539 1.18996 0.90746 0.80870 0.99173 1.21983 1.03821 1.01219 0.89370 1.25262 0.94460 0.90906 1.01609 1.84484 1.51738 1.47832 1.25419 1.29139 0.98734 0.97117 0.79882 1.70310 1.11572 1.10598 1.33052 0.93913 0.79774 0.92542 0.95724 0.74032 0.68827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.54 13.06 21.65 0.28 -61.25 14 2 C -0.08 -4.50 5.50 84.86 0.47 -4.04 14 3 Si 0.98 46.82 29.55 68.60 2.03 48.85 14 4 H -0.28 -13.01 7.11 99.48 0.71 -12.31 14 5 H -0.30 -14.21 7.11 99.48 0.71 -13.50 14 6 H -0.27 -12.04 7.11 99.48 0.71 -11.33 14 7 C -0.25 -14.44 9.99 84.03 0.84 -13.60 14 8 H 0.08 4.48 7.83 -2.91 -0.02 4.46 14 9 N -0.74 -40.18 5.59 -347.18 -1.94 -42.12 14 10 C 0.23 9.95 6.80 85.63 0.58 10.53 14 11 C -0.05 -1.74 6.47 41.26 0.27 -1.47 14 12 C -0.05 -1.53 12.08 66.93 0.81 -0.72 14 13 O -0.21 -5.64 10.78 -3.67 -0.04 -5.68 14 14 C 0.18 4.62 13.23 130.48 1.73 6.35 14 15 N -0.53 -19.44 11.29 -304.07 -3.43 -22.87 14 16 H 0.25 15.34 8.31 -92.71 -0.77 14.57 14 17 H 0.37 21.85 7.66 -92.71 -0.71 21.14 14 18 H 0.06 2.21 8.14 -2.38 -0.02 2.19 14 19 H 0.02 1.12 8.14 -2.39 -0.02 1.10 14 20 H 0.24 5.47 8.06 -2.91 -0.02 5.44 14 21 H 0.30 3.81 8.06 -2.91 -0.02 3.79 14 Total: -1.00 -72.59 201.87 2.12 -70.47 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 0.53 Total: 15.56 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 4.69 Total: -2.96 kcal Atomic # 7 Polarization: -121.16 SS G_CDS: -5.09 Total: -126.25 kcal Atomic # 8 Polarization: -5.64 SS G_CDS: -0.04 Total: -5.68 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -72.59 2.12 -70.47 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306918552.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.413 kcal (2) G-P(sol) polarization free energy of solvation -72.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds