Wall clock time and date at job start Mon Mar 30 2020 02:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99981 * 2 1 4 4 H 1.48502 * 109.47105 * 269.99664 * 3 2 1 5 5 H 1.48496 * 109.47161 * 30.00456 * 3 2 1 6 6 H 1.48503 * 109.46825 * 150.00537 * 3 2 1 7 7 C 1.37875 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00341 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99902 * 179.97438 * 7 2 1 10 10 H 1.09001 * 109.47076 * 299.99858 * 9 7 2 11 11 O 1.42897 * 109.47084 * 59.99668 * 9 7 2 12 12 C 1.50698 * 109.47069 * 179.97438 * 9 7 2 13 13 C 1.34672 * 126.59327 * 274.97592 * 12 9 7 14 14 N 1.34127 * 108.01948 * 180.25090 * 13 12 9 15 15 C 1.30502 * 109.25683 * 359.61488 * 14 13 12 16 16 N 1.35041 * 108.70054 * 0.38692 * 15 14 13 17 17 H 0.96995 * 126.39762 * 179.76511 * 16 15 14 18 18 H 0.96995 * 119.99656 * 359.97438 * 1 2 3 19 19 H 0.96704 * 113.99995 * 60.00654 * 11 9 7 20 20 H 1.08002 * 125.98510 * 359.97438 * 13 12 9 21 21 H 1.08003 * 125.64479 * 180.14464 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5116 -1.1941 -0.0011 10 1 3.8746 -0.6801 -0.8912 11 8 3.9884 -0.5207 1.1656 12 6 4.0139 -2.6149 -0.0010 13 6 4.1934 -3.4028 1.0763 14 7 4.6572 -4.5874 0.6513 15 6 4.7641 -4.5663 -0.6492 16 7 4.3758 -3.3525 -1.0959 17 1 4.3568 -3.0583 -2.0199 18 1 -0.4849 0.8400 0.0004 19 1 3.7034 -0.9244 1.9968 20 1 4.0022 -3.1274 2.1029 21 1 5.1099 -5.3829 -1.2657 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307355120.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:10 Heat of formation + Delta-G solvation = 7.525048 kcal Electronic energy + Delta-G solvation = -9389.306469 eV Core-core repulsion = 7459.411095 eV Total energy + Delta-G solvation = -1929.895374 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.064 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -41.36108 -36.09004 -32.40089 -31.89716 -29.54903 -26.77983 -22.75367 -20.95121 -19.96681 -17.91480 -17.08050 -14.94833 -14.50058 -14.19643 -14.06930 -13.07771 -12.90798 -12.71861 -11.87329 -11.21703 -10.72324 -10.56855 -9.52119 -9.43115 -9.19709 -8.80512 -8.59739 -7.60832 -6.23170 -4.36924 2.74575 3.30148 3.41021 3.64230 3.75125 3.77683 4.42366 5.09457 5.17731 5.70280 5.73827 6.02293 6.25895 6.46533 7.19788 7.34476 7.39235 7.95546 8.18365 8.62587 8.70128 8.87738 9.37980 10.86772 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.080369 B = 0.015737 C = 0.014849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 348.310895 B = 1778.794197 C = 1885.176098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.086 3.914 3 Si 0.870 3.130 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.217 1.217 7 C -0.561 4.561 8 H 0.075 0.925 9 C 0.261 3.739 10 H 0.061 0.939 11 O -0.569 6.569 12 C 0.010 3.990 13 C -0.047 4.047 14 N -0.498 5.498 15 C 0.151 3.849 16 N -0.566 5.566 17 H 0.416 0.584 18 H 0.267 0.733 19 H 0.363 0.637 20 H 0.163 0.837 21 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.631 -2.720 -2.144 8.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.119 4.119 3 Si 0.696 3.304 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.139 1.139 7 C -0.598 4.598 8 H 0.093 0.907 9 C 0.202 3.798 10 H 0.079 0.921 11 O -0.375 6.375 12 C -0.107 4.107 13 C -0.193 4.193 14 N -0.218 5.218 15 C -0.132 4.132 16 N -0.170 5.170 17 H 0.252 0.748 18 H 0.077 0.923 19 H 0.210 0.790 20 H 0.180 0.820 21 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 7.955 -2.916 -1.999 8.705 hybrid contribution -0.363 1.131 -0.749 1.404 sum 7.592 -1.785 -2.747 8.268 Atomic orbital electron populations 1.69941 1.06748 1.27701 1.47812 1.24998 0.94679 0.99860 0.92390 0.87043 0.83078 0.81818 0.78489 1.21286 1.21838 1.13944 1.21361 0.88571 0.95108 1.54755 0.90686 1.18193 0.93642 0.81405 0.86523 0.92139 1.86711 1.78180 1.56146 1.16455 1.22717 1.02816 0.98439 0.86763 1.21797 1.08330 0.90301 0.98843 1.70122 1.18940 1.23437 1.09260 1.24688 1.06884 0.89343 0.92286 1.43195 1.51005 1.13009 1.09820 0.74764 0.92298 0.78972 0.81995 0.78477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.38 13.96 55.43 0.77 -25.60 14 2 C 0.09 2.40 5.47 -17.82 -0.10 2.31 14 3 Si 0.87 20.87 26.99 -169.99 -4.59 16.28 14 4 H -0.29 -6.82 7.11 56.52 0.40 -6.42 14 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 14 6 H -0.22 -5.08 5.31 56.52 0.30 -4.78 14 7 C -0.56 -15.21 9.33 -34.44 -0.32 -15.53 14 8 H 0.08 2.27 7.98 -52.49 -0.42 1.85 14 9 C 0.26 5.98 2.85 -29.03 -0.08 5.90 14 10 H 0.06 1.37 7.57 -51.93 -0.39 0.98 14 11 O -0.57 -12.60 10.02 -35.23 -0.35 -12.95 14 12 C 0.01 0.20 6.24 -81.60 -0.51 -0.31 14 13 C -0.05 -0.96 11.25 -17.81 -0.20 -1.16 14 14 N -0.50 -9.86 11.25 -14.66 -0.16 -10.03 14 15 C 0.15 2.48 13.04 -90.38 -1.18 1.30 14 16 N -0.57 -9.69 6.15 -10.30 -0.06 -9.75 14 17 H 0.42 5.74 8.96 -40.82 -0.37 5.37 14 18 H 0.27 7.46 8.31 -40.82 -0.34 7.12 14 19 H 0.36 7.08 8.23 45.56 0.37 7.45 14 20 H 0.16 3.07 7.60 -52.49 -0.40 2.67 14 21 H 0.20 2.26 8.06 -52.48 -0.42 1.83 14 LS Contribution 192.78 15.07 2.91 2.91 Total: -1.00 -32.49 192.78 -4.74 -37.23 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -0.86 Total: 9.40 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -2.39 Total: -7.49 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: 0.55 Total: -45.38 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -0.35 Total: -12.95 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.59 Total: 16.28 kcal Total LS contribution 2.91 Total: 2.91 kcal Total: -32.49 -4.74 -37.23 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307355120.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.754 kcal (2) G-P(sol) polarization free energy of solvation -32.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds