Wall clock time and date at job start Mon Mar 30 2020 02:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31400 * 1 3 3 Si 1.86801 * 120.00444 * 2 1 4 4 H 1.48498 * 109.46790 * 269.99647 * 3 2 1 5 5 H 1.48499 * 109.46984 * 29.99650 * 3 2 1 6 6 H 1.48495 * 109.47185 * 149.99880 * 3 2 1 7 7 C 1.38835 * 119.99845 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00183 * 180.02562 * 7 2 1 9 9 O 1.34833 * 119.99784 * 0.02562 * 7 2 1 10 10 C 1.34813 * 116.99836 * 179.97438 * 9 7 2 11 11 O 1.21573 * 120.00014 * 359.97438 * 10 9 7 12 12 C 1.46874 * 119.99908 * 180.27196 * 10 9 7 13 13 C 1.33228 * 135.14423 * 179.36022 * 12 10 9 14 14 C 1.50756 * 97.84145 * 179.97438 * 13 12 10 15 15 C 1.50765 * 135.14114 * 359.72608 * 12 10 9 16 16 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 17 17 H 1.08001 * 131.07607 * 359.97349 * 13 12 10 18 18 H 1.09003 * 114.55011 * 246.79476 * 14 13 12 19 19 H 1.09006 * 114.13653 * 113.70409 * 14 13 12 20 20 H 1.09006 * 113.16643 * 295.21607 * 15 12 10 21 21 H 1.08999 * 113.17050 * 64.71665 * 15 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0462 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5456 1.4400 0.7000 7 6 2.0081 -1.2024 0.0005 8 1 3.0882 -1.2024 0.0010 9 8 1.3339 -2.3700 0.0005 10 6 2.0681 -3.5007 0.0005 11 8 3.2822 -3.4371 0.0001 12 6 1.4013 -4.8093 -0.0055 13 6 1.8097 -6.0774 -0.0176 14 6 0.4512 -6.7310 -0.0139 15 6 -0.0315 -5.2786 -0.0073 16 1 -0.4850 0.8401 -0.0004 17 1 2.8022 -6.5032 -0.0272 18 1 0.2183 -7.2863 0.8948 19 1 0.2171 -7.2778 -0.9274 20 1 -0.5717 -5.0107 0.9008 21 1 -0.5725 -5.0011 -0.9119 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307659719.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:45 Heat of formation + Delta-G solvation = -53.360316 kcal Electronic energy + Delta-G solvation = -9090.520142 eV Core-core repulsion = 7125.691829 eV Total energy + Delta-G solvation = -1964.828313 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.057 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -41.15115 -39.51972 -37.18706 -34.36919 -28.81334 -27.09379 -25.90123 -23.10802 -19.97938 -19.53072 -17.83977 -16.99512 -16.80284 -16.28259 -15.82172 -14.91592 -14.17802 -13.66520 -13.25935 -13.06040 -12.46742 -12.33774 -12.19750 -12.08501 -11.57191 -11.09937 -10.76245 -10.17019 -8.60970 -6.39480 0.19983 1.31642 1.39152 1.50268 2.09646 2.13288 2.79010 2.95281 3.41182 3.84086 4.16532 4.38207 4.59698 4.77151 5.03658 5.05055 5.24337 5.28069 5.66090 5.75768 6.54541 6.82827 7.69099 8.60066 Molecular weight = 168.06amu Principal moments of inertia in cm(-1) A = 0.100477 B = 0.012247 C = 0.011006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 278.603428 B = 2285.767042 C = 2543.464694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C -0.003 4.003 3 Si 1.023 2.977 4 H -0.257 1.257 5 H -0.255 1.255 6 H -0.264 1.264 7 C -0.427 4.427 8 H 0.081 0.919 9 O -0.234 6.234 10 C 0.452 3.548 11 O -0.590 6.590 12 C -0.238 4.238 13 C -0.064 4.064 14 C -0.083 4.083 15 C -0.095 4.095 16 H 0.282 0.718 17 H 0.144 0.856 18 H 0.132 0.868 19 H 0.131 0.869 20 H 0.081 0.919 21 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.379 -8.409 -0.053 8.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.204 4.204 3 Si 0.841 3.159 4 H -0.182 1.182 5 H -0.179 1.179 6 H -0.188 1.188 7 C -0.503 4.503 8 H 0.099 0.901 9 O -0.142 6.142 10 C 0.303 3.697 11 O -0.490 6.490 12 C -0.239 4.239 13 C -0.082 4.082 14 C -0.119 4.119 15 C -0.132 4.132 16 H 0.091 0.909 17 H 0.162 0.838 18 H 0.150 0.850 19 H 0.149 0.851 20 H 0.099 0.901 21 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.303 -8.231 -0.050 8.334 hybrid contribution 0.623 0.991 -0.001 1.170 sum -0.681 -7.240 -0.051 7.272 Atomic orbital electron populations 1.70062 1.07781 1.29726 1.45858 1.26672 0.96981 1.02436 0.94301 0.84565 0.77633 0.73974 0.79742 1.18168 1.17896 1.18781 1.21544 0.92335 0.81194 1.55202 0.90082 1.83960 1.39945 1.14068 1.76189 1.21006 0.85376 0.86084 0.77230 1.90583 1.16632 1.88679 1.53142 1.22300 1.00974 0.90318 1.10275 1.25735 1.01133 0.91802 0.89556 1.22122 0.89161 0.94520 1.06113 1.21980 0.91885 0.96003 1.03316 0.90852 0.83796 0.85037 0.85130 0.90095 0.90070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.39 13.67 21.64 0.30 -54.09 14 2 C 0.00 -0.18 5.50 84.90 0.47 0.29 14 3 Si 1.02 44.43 29.55 68.60 2.03 46.45 14 4 H -0.26 -10.49 7.11 99.48 0.71 -9.79 14 5 H -0.26 -10.10 7.11 99.48 0.71 -9.39 14 6 H -0.26 -11.24 7.11 99.48 0.71 -10.54 14 7 C -0.43 -27.44 9.65 67.96 0.66 -26.78 14 8 H 0.08 5.27 6.86 -2.91 -0.02 5.25 14 9 O -0.23 -14.94 9.75 10.73 0.10 -14.84 14 10 C 0.45 25.70 7.88 70.08 0.55 26.25 14 11 O -0.59 -36.05 16.36 19.60 0.32 -35.73 14 12 C -0.24 -10.04 7.32 -18.71 -0.14 -10.17 14 13 C -0.06 -1.94 11.88 17.48 0.21 -1.73 14 14 C -0.08 -1.71 8.55 29.88 0.26 -1.46 14 15 C -0.09 -3.01 7.98 22.79 0.18 -2.83 14 16 H 0.28 15.30 8.31 -92.71 -0.77 14.53 14 17 H 0.14 3.91 8.06 -2.91 -0.02 3.88 14 18 H 0.13 1.94 8.14 -2.39 -0.02 1.92 14 19 H 0.13 1.93 8.14 -2.38 -0.02 1.91 14 20 H 0.08 2.55 8.14 -2.38 -0.02 2.53 14 21 H 0.08 2.56 8.14 -2.39 -0.02 2.54 14 Total: -1.00 -77.95 205.19 6.16 -71.79 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: 1.23 Total: 2.85 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: 2.18 Total: -16.44 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: 0.30 Total: -54.09 kcal Atomic # 8 Polarization: -50.99 SS G_CDS: 0.43 Total: -50.57 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -77.95 6.16 -71.79 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307659719.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.433 kcal (2) G-P(sol) polarization free energy of solvation -77.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds