Wall clock time and date at job start Mon Mar 30 2020 01:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 120.00030 * 2 1 4 4 H 1.48496 * 109.46899 * 269.99638 * 3 2 1 5 5 H 1.48493 * 109.46745 * 30.00024 * 3 2 1 6 6 H 1.48503 * 109.47089 * 149.99833 * 3 2 1 7 7 C 1.38820 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00012 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99688 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99707 * 179.72432 * 9 7 2 11 11 C 1.50698 * 109.47376 * 179.97438 * 10 9 7 12 12 C 1.30996 * 120.00063 * 234.35319 * 11 10 9 13 13 C 1.50699 * 120.00376 * 354.15363 * 12 11 10 14 14 C 1.52995 * 117.49836 * 182.83935 * 13 12 11 15 15 C 1.52999 * 117.49573 * 114.18182 * 13 12 11 16 16 H 0.96997 * 119.99790 * 0.02562 * 1 2 3 17 17 H 0.97003 * 120.00395 * 359.97438 * 9 7 2 18 18 H 1.08999 * 109.46965 * 300.00077 * 10 9 7 19 19 H 1.09000 * 109.47185 * 59.99794 * 10 9 7 20 20 H 1.07997 * 119.99533 * 54.34991 * 11 10 9 21 21 H 1.08006 * 119.99933 * 174.16016 * 12 11 10 22 22 H 1.09001 * 115.55144 * 328.51589 * 13 12 11 23 23 H 1.08998 * 117.50133 * 0.02562 * 14 13 12 24 24 H 1.09002 * 117.49441 * 145.02707 * 14 13 12 25 25 H 1.09005 * 117.49488 * 214.98411 * 15 13 12 26 26 H 1.09004 * 117.50374 * 359.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 -0.0050 11 6 1.0788 -4.8022 -0.0032 12 6 1.1596 -5.7315 0.9166 13 6 2.3082 -5.7284 1.8922 14 6 2.3823 -6.8773 2.8997 15 6 1.9828 -5.4750 3.3655 16 1 -0.4850 0.8400 -0.0004 17 1 0.3555 -2.3881 0.0005 18 1 2.6813 -3.7125 -0.8975 19 1 2.6881 -3.7164 0.8825 20 1 0.3105 -4.8569 -0.7601 21 1 0.4031 -6.5001 0.9756 22 1 3.2491 -5.3331 1.5094 23 1 1.6006 -7.6357 2.8568 24 1 3.3721 -7.2377 3.1801 25 1 2.7099 -4.9134 3.9521 26 1 0.9381 -5.3102 3.6292 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382089116.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:38 Heat of formation + Delta-G solvation = 29.402179 kcal Electronic energy + Delta-G solvation = -9014.375651 eV Core-core repulsion = 7286.687946 eV Total energy + Delta-G solvation = -1727.687705 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.86985 -36.69127 -34.29859 -32.02272 -27.35331 -24.48116 -23.45911 -23.15723 -19.80403 -18.87603 -16.88864 -16.49269 -16.06872 -15.16476 -14.98969 -14.51786 -13.74559 -13.35906 -12.88141 -12.67557 -12.37118 -12.16268 -11.97767 -11.82604 -11.51517 -11.17678 -10.94515 -9.72266 -8.99534 -7.96602 -5.26304 1.22507 1.46819 1.49391 1.57988 2.56604 3.10366 3.36818 3.78174 4.06968 4.17815 4.19082 4.28777 4.45571 4.60127 4.81380 4.93085 5.04324 5.12367 5.29160 5.35366 5.45672 5.69062 5.96789 6.26158 7.31171 8.06347 8.31520 9.27385 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.076668 B = 0.009939 C = 0.009488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.124609 B = 2816.472702 C = 2950.480870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.076 4.076 3 Si 0.979 3.021 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.268 1.268 7 C -0.250 4.250 8 H 0.076 0.924 9 N -0.743 5.743 10 C 0.172 3.828 11 C -0.169 4.169 12 C -0.114 4.114 13 C -0.147 4.147 14 C -0.152 4.152 15 C -0.181 4.181 16 H 0.252 0.748 17 H 0.373 0.627 18 H 0.019 0.981 19 H 0.035 0.965 20 H 0.110 0.890 21 H 0.131 0.869 22 H 0.101 0.899 23 H 0.107 0.893 24 H 0.109 0.891 25 H 0.095 0.905 26 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.223 -11.694 4.228 13.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.268 4.268 3 Si 0.807 3.193 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.193 1.193 7 C -0.382 4.382 8 H 0.094 0.906 9 N -0.385 5.385 10 C 0.047 3.953 11 C -0.188 4.188 12 C -0.133 4.133 13 C -0.165 4.165 14 C -0.188 4.188 15 C -0.218 4.218 16 H 0.061 0.939 17 H 0.205 0.795 18 H 0.037 0.963 19 H 0.052 0.948 20 H 0.128 0.872 21 H 0.149 0.851 22 H 0.119 0.881 23 H 0.126 0.874 24 H 0.128 0.872 25 H 0.114 0.886 26 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.400 -11.597 4.236 13.107 hybrid contribution -0.177 1.125 -0.225 1.161 sum 4.223 -10.471 4.012 11.982 Atomic orbital electron populations 1.69834 1.06759 1.26225 1.59376 1.25637 0.96465 1.01275 1.03433 0.85069 0.77678 0.79019 0.77566 1.21182 1.21929 1.19303 1.19685 0.91556 0.85337 1.41604 0.90635 1.42528 1.05620 1.00950 1.89430 1.19924 0.93468 0.84004 0.97920 1.22886 1.00402 0.95591 0.99899 1.22358 0.97434 0.98974 0.94531 1.21271 0.98754 1.05623 0.90841 1.23083 1.03881 0.90819 1.01065 1.22964 1.02440 1.00569 0.95872 0.93879 0.79540 0.96315 0.94756 0.87158 0.85092 0.88060 0.87418 0.87230 0.88649 0.89238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.27 13.06 21.65 0.28 -60.98 15 2 C -0.08 -4.51 5.50 84.86 0.47 -4.04 15 3 Si 0.98 47.10 29.55 68.60 2.03 49.13 15 4 H -0.28 -13.40 7.11 99.48 0.71 -12.69 15 5 H -0.29 -14.06 7.11 99.48 0.71 -13.36 15 6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 15 7 C -0.25 -14.65 9.99 84.04 0.84 -13.81 15 8 H 0.08 4.23 7.83 -2.91 -0.02 4.21 15 9 N -0.74 -40.46 5.59 -347.18 -1.94 -42.40 15 10 C 0.17 7.52 6.40 85.63 0.55 8.06 15 11 C -0.17 -6.07 9.63 25.65 0.25 -5.82 15 12 C -0.11 -3.39 9.66 25.65 0.25 -3.14 15 13 C -0.15 -4.08 4.84 -11.54 -0.06 -4.14 15 14 C -0.15 -3.13 10.24 30.62 0.31 -2.82 15 15 C -0.18 -4.70 10.24 30.62 0.31 -4.39 15 16 H 0.25 15.30 8.31 -92.71 -0.77 14.53 15 17 H 0.37 21.52 7.66 -92.71 -0.71 20.81 15 18 H 0.02 0.83 8.14 -2.39 -0.02 0.81 15 19 H 0.03 1.48 5.71 -2.39 -0.01 1.47 15 20 H 0.11 3.82 8.06 -2.91 -0.02 3.80 15 21 H 0.13 3.19 8.06 -2.91 -0.02 3.16 15 22 H 0.10 2.99 6.82 -2.39 -0.02 2.97 15 23 H 0.11 1.90 8.14 -2.39 -0.02 1.88 15 24 H 0.11 1.89 8.14 -2.39 -0.02 1.87 15 25 H 0.10 2.40 8.14 -2.38 -0.02 2.38 15 26 H 0.09 2.38 8.14 -2.38 -0.02 2.36 15 Total: -1.00 -65.35 229.17 3.73 -61.62 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: 0.44 Total: 22.73 kcal Atomic # 6 Polarization: -33.01 SS G_CDS: 2.92 Total: -30.09 kcal Atomic # 7 Polarization: -101.72 SS G_CDS: -1.66 Total: -103.38 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -65.35 3.73 -61.62 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382089116.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.019 kcal (2) G-P(sol) polarization free energy of solvation -65.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds