Wall clock time and date at job start Mon Mar 30 2020 01:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.35637 * 126.24176 * 2 1 4 4 N 1.40574 * 126.08379 * 359.97438 * 3 2 1 5 5 C 1.40661 * 107.84314 * 180.26362 * 3 2 1 6 6 N 1.30930 * 108.40359 * 359.73216 * 5 3 2 7 7 N 1.36594 * 126.24805 * 179.80615 * 2 1 3 8 8 C 1.37307 * 126.08009 * 359.97438 * 7 2 1 9 9 H 1.08002 * 120.00270 * 359.72055 * 8 7 2 10 10 C 1.38978 * 119.99968 * 179.43933 * 8 7 2 11 11 N 1.31304 * 120.00019 * 0.27648 * 10 8 7 12 12 Si 1.86803 * 119.99981 * 180.27794 * 10 8 7 13 13 H 1.48498 * 109.47174 * 90.00078 * 12 10 8 14 14 H 1.48501 * 109.47062 * 210.00029 * 12 10 8 15 15 H 1.48495 * 109.46833 * 329.99651 * 12 10 8 16 16 H 1.09000 * 109.47155 * 270.18886 * 1 2 3 17 17 H 1.09001 * 109.46804 * 30.19551 * 1 2 3 18 18 H 1.08999 * 109.46909 * 150.19139 * 1 2 3 19 19 H 0.96990 * 120.00090 * 180.34121 * 4 3 2 20 20 H 0.97006 * 119.99158 * 0.34070 * 4 3 2 21 21 H 1.08007 * 125.79591 * 179.70363 * 5 3 2 22 22 H 0.97005 * 119.99967 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3090 1.0940 0.0000 4 7 1.8822 2.4333 -0.0005 5 6 3.6437 0.6500 -0.0062 6 7 3.6438 -0.6593 -0.0039 7 7 2.3147 -1.1016 0.0037 8 6 1.8979 -2.4098 0.0086 9 1 0.8428 -2.6405 0.0144 10 6 2.8337 -3.4373 0.0003 11 7 4.1165 -3.1570 -0.0068 12 14 2.2666 -5.2172 -0.0009 13 1 2.1078 -5.6852 -1.4012 14 1 3.2758 -6.0587 0.6909 15 1 0.9654 -5.3225 0.7069 16 1 -0.3633 0.0034 1.0276 17 1 -0.3633 0.8883 -0.5169 18 1 -0.3633 -0.8917 -0.5109 19 1 2.5352 3.1504 -0.0055 20 1 0.9345 2.6403 0.0041 21 1 4.5196 1.2819 -0.0122 22 1 4.7696 -3.8742 -0.0123 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575512895.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:33 Heat of formation + Delta-G solvation = 51.119009 kcal Electronic energy + Delta-G solvation = -9310.225474 eV Core-core repulsion = 7479.939138 eV Total energy + Delta-G solvation = -1830.286336 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.075 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.28511 -35.75871 -34.27198 -32.92572 -30.38779 -26.91102 -26.29985 -22.37267 -20.41894 -19.05256 -17.28039 -16.40547 -16.33765 -15.53290 -15.25367 -14.68209 -13.61604 -13.40827 -13.17104 -12.85417 -12.69162 -12.40234 -12.05446 -11.71418 -10.77164 -10.64383 -9.83970 -8.38593 -7.82852 -6.06190 1.35200 1.40646 1.57582 1.84070 2.17616 2.55267 2.90782 3.15114 3.69430 4.44688 4.57762 4.75112 4.91649 5.04622 5.10537 5.30412 5.64537 6.01607 6.23745 6.76671 7.20424 7.52453 7.66465 7.87648 8.61958 Molecular weight = 167.08amu Principal moments of inertia in cm(-1) A = 0.081980 B = 0.016390 C = 0.013761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 341.463168 B = 1707.930268 C = 2034.243381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 C -0.111 4.111 3 C 0.027 3.973 4 N -0.868 5.868 5 C -0.120 4.120 6 N -0.302 5.302 7 N -0.175 5.175 8 C -0.352 4.352 9 H 0.130 0.870 10 C -0.008 4.008 11 N -0.832 5.832 12 Si 1.014 2.986 13 H -0.265 1.265 14 H -0.276 1.276 15 H -0.248 1.248 16 H 0.062 0.938 17 H 0.083 0.917 18 H 0.057 0.943 19 H 0.397 0.603 20 H 0.395 0.605 21 H 0.167 0.833 22 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.532 2.845 -0.017 7.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.241 4.241 3 C -0.082 4.082 4 N -0.418 5.418 5 C -0.296 4.296 6 N -0.136 5.136 7 N 0.050 4.950 8 C -0.483 4.483 9 H 0.147 0.853 10 C -0.219 4.219 11 N -0.461 5.461 12 Si 0.833 3.167 13 H -0.190 1.190 14 H -0.201 1.201 15 H -0.171 1.171 16 H 0.081 0.919 17 H 0.102 0.898 18 H 0.076 0.924 19 H 0.225 0.775 20 H 0.223 0.777 21 H 0.184 0.816 22 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.564 1.599 -0.012 5.789 hybrid contribution -0.212 0.459 -0.014 0.506 sum -5.776 2.057 -0.026 6.132 Atomic orbital electron populations 1.19937 0.86589 1.02474 1.01673 1.20828 0.95218 0.86634 1.21441 1.17261 0.91212 0.86437 1.13329 1.41054 1.08676 1.00794 1.91310 1.23599 0.96557 0.93471 1.15928 1.77933 0.98388 1.10355 1.26926 1.44610 1.02593 1.04808 1.42950 1.20387 0.95278 0.78740 1.53916 0.85282 1.26762 0.94650 1.05796 0.94655 1.70398 1.01944 1.34864 1.38892 0.84669 0.78939 0.73899 0.79162 1.18978 1.20062 1.17089 0.91882 0.89801 0.92440 0.77532 0.77693 0.81580 0.91728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.80 9.86 71.24 0.70 -1.10 14 2 C -0.11 -5.49 6.95 41.22 0.29 -5.20 14 3 C 0.03 1.28 7.23 37.73 0.27 1.55 14 4 N -0.87 -29.43 9.18 -51.64 -0.47 -29.91 14 5 C -0.12 -6.26 12.05 85.42 1.03 -5.24 14 6 N -0.30 -18.39 10.40 -56.44 -0.59 -18.98 14 7 N -0.18 -10.19 3.74 -178.28 -0.67 -10.85 14 8 C -0.35 -19.69 9.97 84.01 0.84 -18.85 14 9 H 0.13 6.44 7.08 -2.91 -0.02 6.42 14 10 C -0.01 -0.46 5.50 84.95 0.47 0.01 14 11 N -0.83 -49.33 11.81 21.66 0.26 -49.08 14 12 Si 1.01 40.35 29.55 68.60 2.03 42.38 14 13 H -0.26 -10.13 7.11 99.48 0.71 -9.42 14 14 H -0.28 -10.75 7.11 99.48 0.71 -10.05 14 15 H -0.25 -9.04 7.11 99.48 0.71 -8.33 14 16 H 0.06 2.15 8.14 -2.39 -0.02 2.13 14 17 H 0.08 2.55 7.62 -2.39 -0.02 2.53 14 18 H 0.06 2.10 7.39 -2.39 -0.02 2.08 14 19 H 0.40 11.47 8.96 -92.72 -0.83 10.64 14 20 H 0.39 11.25 8.22 -92.70 -0.76 10.48 14 21 H 0.17 7.55 8.06 -2.91 -0.02 7.53 14 22 H 0.27 14.87 8.31 -92.70 -0.77 14.10 14 Total: -1.00 -70.95 201.32 3.81 -67.14 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: -0.34 Total: 28.12 kcal Atomic # 6 Polarization: -32.42 SS G_CDS: 3.60 Total: -28.83 kcal Atomic # 7 Polarization: -107.34 SS G_CDS: -1.47 Total: -108.82 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Total: -70.95 3.81 -67.14 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575512895.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.255 kcal (2) G-P(sol) polarization free energy of solvation -70.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds