Wall clock time and date at job start Mon Mar 30 2020 01:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00480 * 2 1 4 4 H 1.48500 * 109.47058 * 270.00412 * 3 2 1 5 5 H 1.48500 * 109.46680 * 30.00383 * 3 2 1 6 6 H 1.48505 * 109.47060 * 150.00268 * 3 2 1 7 7 C 1.38820 * 119.99729 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99841 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00026 * 179.97438 * 7 2 1 10 10 C 1.46506 * 119.99730 * 179.97438 * 9 7 2 11 11 C 1.52993 * 119.29923 * 250.52159 * 10 9 7 12 12 C 1.53005 * 60.37970 * 248.69777 * 11 10 9 13 13 H 1.09001 * 119.75631 * 111.12241 * 12 11 10 14 14 C 1.54266 * 118.19772 * 266.38525 * 12 11 10 15 15 C 1.54894 * 104.31305 * 87.71913 * 14 12 11 16 16 C 1.54268 * 117.40895 * 46.18142 * 10 9 7 17 17 H 0.97001 * 119.99470 * 359.97438 * 1 2 3 18 18 H 0.96997 * 120.00480 * 0.02562 * 9 7 2 19 19 H 1.09000 * 117.45949 * 141.09872 * 11 10 9 20 20 H 1.09001 * 117.46335 * 356.29129 * 11 10 9 21 21 H 1.09002 * 110.48629 * 206.46666 * 14 12 11 22 22 H 1.08998 * 110.48744 * 328.97570 * 14 12 11 23 23 H 1.09009 * 110.75096 * 80.43958 * 15 14 12 24 24 H 1.08990 * 110.75818 * 203.80757 * 15 14 12 25 25 H 1.09000 * 110.48569 * 235.03863 * 16 10 9 26 26 H 1.08992 * 110.48734 * 357.55326 * 16 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3795 -1.2023 -0.0011 10 6 4.1119 -2.4712 -0.0011 11 6 4.8720 -2.8969 1.2566 12 6 5.6503 -2.5069 -0.0017 13 1 6.2386 -1.5894 -0.0113 14 6 6.0647 -3.6265 -0.9788 15 6 4.8514 -3.7726 -1.9305 16 6 3.6454 -3.5605 -0.9888 17 1 -0.4849 0.8401 0.0004 18 1 3.8646 -0.3624 -0.0007 19 1 4.8475 -3.9530 1.5253 20 1 4.8887 -2.1995 2.0941 21 1 6.9546 -3.3357 -1.5370 22 1 6.2409 -4.5574 -0.4397 23 1 4.8687 -3.0005 -2.6997 24 1 4.8296 -4.7657 -2.3790 25 1 3.4285 -4.4881 -0.4591 26 1 2.7684 -3.2239 -1.5415 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575529772.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:56 Heat of formation + Delta-G solvation = 32.269211 kcal Electronic energy + Delta-G solvation = -9539.807157 eV Core-core repulsion = 7812.243776 eV Total energy + Delta-G solvation = -1727.563381 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.94788 -33.66003 -31.35493 -30.20020 -27.20496 -23.43373 -21.95365 -19.89231 -18.39582 -17.48928 -15.66007 -14.57713 -14.13332 -13.24746 -12.73883 -12.69755 -12.39593 -11.73135 -11.19205 -10.94708 -10.69023 -10.55832 -10.41918 -10.21183 -9.84676 -9.55905 -9.15364 -8.64919 -7.19334 -5.78795 -3.13762 3.36486 3.39738 3.43995 4.32237 4.57228 5.00473 5.15140 5.27482 5.39128 5.58001 5.72944 5.92720 6.02193 6.10642 6.19265 6.28692 6.32920 6.38692 6.64582 6.74963 6.81292 6.97263 8.00346 8.41446 9.18761 9.91508 10.11037 11.39219 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.068323 B = 0.015043 C = 0.014078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.722352 B = 1860.869107 C = 1988.413926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.883 3.117 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.240 4.240 8 H 0.094 0.906 9 N -0.711 5.711 10 C 0.157 3.843 11 C -0.185 4.185 12 C -0.200 4.200 13 H 0.097 0.903 14 C -0.088 4.088 15 C -0.121 4.121 16 C -0.091 4.091 17 H 0.260 0.740 18 H 0.364 0.636 19 H 0.081 0.919 20 H 0.089 0.911 21 H 0.060 0.940 22 H 0.061 0.939 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.521 -5.458 -1.599 11.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.191 4.191 3 Si 0.713 3.287 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.370 4.370 8 H 0.112 0.888 9 N -0.350 5.350 10 C 0.064 3.936 11 C -0.226 4.226 12 C -0.220 4.220 13 H 0.116 0.884 14 C -0.126 4.126 15 C -0.159 4.159 16 C -0.130 4.130 17 H 0.070 0.930 18 H 0.198 0.802 19 H 0.099 0.901 20 H 0.107 0.893 21 H 0.079 0.921 22 H 0.080 0.920 23 H 0.084 0.916 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.217 -5.468 -1.631 11.702 hybrid contribution 0.642 1.377 0.170 1.529 sum 10.859 -4.091 -1.461 11.695 Atomic orbital electron populations 1.69694 1.05028 1.25865 1.57340 1.24661 0.95259 0.97141 1.02010 0.86569 0.79212 0.85067 0.77844 1.20988 1.21590 1.20419 1.19041 0.80135 0.94883 1.42937 0.88804 1.42085 1.03832 1.00600 1.88503 1.20813 0.87854 0.89320 0.95644 1.23610 1.05443 1.00698 0.92828 1.23488 0.97265 1.00439 1.00812 0.88445 1.21856 0.97530 0.97162 0.96018 1.22580 0.94638 1.00666 0.97979 1.21938 0.98314 0.96593 0.96151 0.92981 0.80203 0.90091 0.89271 0.92146 0.92036 0.91621 0.91965 0.92292 0.89800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.38 13.97 55.49 0.78 -28.60 15 2 C 0.01 0.15 5.50 -17.43 -0.10 0.05 15 3 Si 0.88 22.35 27.74 -169.99 -4.71 17.64 15 4 H -0.28 -7.11 7.11 56.52 0.40 -6.71 15 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 15 6 H -0.28 -6.70 6.52 56.52 0.37 -6.33 15 7 C -0.24 -6.87 9.74 -15.06 -0.15 -7.02 15 8 H 0.09 2.85 7.69 -52.49 -0.40 2.45 15 9 N -0.71 -17.59 5.51 -46.19 -0.25 -17.85 15 10 C 0.16 3.24 3.22 -130.70 -0.42 2.82 15 11 C -0.18 -3.36 10.06 -26.73 -0.27 -3.63 15 12 C -0.20 -3.45 6.94 -89.50 -0.62 -4.07 15 13 H 0.10 1.65 8.14 -51.93 -0.42 1.23 15 14 C -0.09 -1.26 6.63 -25.07 -0.17 -1.43 15 15 C -0.12 -1.83 6.89 -24.96 -0.17 -2.00 15 16 C -0.09 -1.69 6.17 -25.29 -0.16 -1.85 15 17 H 0.26 7.80 8.31 -40.82 -0.34 7.46 15 18 H 0.36 8.87 5.89 -40.82 -0.24 8.63 15 19 H 0.08 1.33 8.14 -51.93 -0.42 0.90 15 20 H 0.09 1.66 8.14 -51.93 -0.42 1.24 15 21 H 0.06 0.77 8.14 -51.93 -0.42 0.34 15 22 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 23 H 0.07 1.02 8.14 -51.92 -0.42 0.60 15 24 H 0.06 0.80 8.14 -51.93 -0.42 0.37 15 25 H 0.06 1.01 8.14 -51.93 -0.42 0.58 15 26 H 0.08 1.74 7.36 -51.93 -0.38 1.36 15 LS Contribution 217.48 15.07 3.28 3.28 Total: -1.00 -30.59 217.48 -6.54 -37.13 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -3.58 Total: 5.52 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: -2.05 Total: -17.12 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: 0.52 Total: -46.45 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.71 Total: 17.64 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -30.59 -6.54 -37.13 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575529772.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.404 kcal (2) G-P(sol) polarization free energy of solvation -30.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds