Wall clock time and date at job start Mon Mar 30 2020 01:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00480 * 2 1 4 4 H 1.48500 * 109.47058 * 270.00412 * 3 2 1 5 5 H 1.48500 * 109.46680 * 30.00383 * 3 2 1 6 6 H 1.48505 * 109.47060 * 150.00268 * 3 2 1 7 7 C 1.38820 * 119.99729 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99841 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00026 * 179.97438 * 7 2 1 10 10 C 1.46506 * 119.99730 * 179.97438 * 9 7 2 11 11 C 1.52993 * 119.29923 * 250.52159 * 10 9 7 12 12 C 1.53005 * 60.37970 * 248.69777 * 11 10 9 13 13 H 1.09001 * 119.75631 * 111.12241 * 12 11 10 14 14 C 1.54266 * 118.19772 * 266.38525 * 12 11 10 15 15 C 1.54894 * 104.31305 * 87.71913 * 14 12 11 16 16 C 1.54268 * 117.40895 * 46.18142 * 10 9 7 17 17 H 0.97001 * 119.99470 * 359.97438 * 1 2 3 18 18 H 0.96997 * 120.00480 * 0.02562 * 9 7 2 19 19 H 1.09000 * 117.45949 * 141.09872 * 11 10 9 20 20 H 1.09001 * 117.46335 * 356.29129 * 11 10 9 21 21 H 1.09002 * 110.48629 * 206.46666 * 14 12 11 22 22 H 1.08998 * 110.48744 * 328.97570 * 14 12 11 23 23 H 1.09009 * 110.75096 * 80.43958 * 15 14 12 24 24 H 1.08990 * 110.75818 * 203.80757 * 15 14 12 25 25 H 1.09000 * 110.48569 * 235.03863 * 16 10 9 26 26 H 1.08992 * 110.48734 * 357.55326 * 16 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3795 -1.2023 -0.0011 10 6 4.1119 -2.4712 -0.0011 11 6 4.8720 -2.8969 1.2566 12 6 5.6503 -2.5069 -0.0017 13 1 6.2386 -1.5894 -0.0113 14 6 6.0647 -3.6265 -0.9788 15 6 4.8514 -3.7726 -1.9305 16 6 3.6454 -3.5605 -0.9888 17 1 -0.4849 0.8401 0.0004 18 1 3.8646 -0.3624 -0.0007 19 1 4.8475 -3.9530 1.5253 20 1 4.8887 -2.1995 2.0941 21 1 6.9546 -3.3357 -1.5370 22 1 6.2409 -4.5574 -0.4397 23 1 4.8687 -3.0005 -2.6997 24 1 4.8296 -4.7657 -2.3790 25 1 3.4285 -4.4881 -0.4591 26 1 2.7684 -3.2239 -1.5415 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575529772.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:56 Heat of formation + Delta-G solvation = 12.235080 kcal Electronic energy + Delta-G solvation = -9540.675902 eV Core-core repulsion = 7812.243776 eV Total energy + Delta-G solvation = -1728.432126 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.39507 -35.65644 -33.13458 -31.91971 -28.61294 -25.53125 -23.32615 -21.26487 -20.06172 -19.52418 -17.29495 -16.32001 -15.73168 -14.90298 -14.71553 -14.05132 -13.93150 -13.40725 -13.09761 -12.71399 -12.36110 -12.02562 -11.75232 -11.72917 -11.64309 -11.46792 -10.87440 -10.39395 -9.16439 -8.04927 -5.37774 1.33936 1.37386 1.44429 2.44957 2.86685 3.28185 3.41594 3.73186 3.96564 4.10029 4.40515 4.60241 4.64899 4.80026 4.91290 4.99455 5.01867 5.08910 5.26833 5.35520 5.46733 5.57035 5.78544 6.20191 7.04095 7.81872 7.99696 9.16526 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.068323 B = 0.015043 C = 0.014078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.722352 B = 1860.869107 C = 1988.413926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.065 4.065 3 Si 0.955 3.045 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.257 1.257 7 C -0.224 4.224 8 H 0.060 0.940 9 N -0.720 5.720 10 C 0.103 3.897 11 C -0.178 4.178 12 C -0.173 4.173 13 H 0.103 0.897 14 C -0.081 4.081 15 C -0.113 4.113 16 C -0.093 4.093 17 H 0.258 0.742 18 H 0.366 0.634 19 H 0.101 0.899 20 H 0.081 0.919 21 H 0.085 0.915 22 H 0.082 0.918 23 H 0.057 0.943 24 H 0.090 0.910 25 H 0.069 0.931 26 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.370 -5.857 -1.768 14.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.257 4.257 3 Si 0.783 3.217 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.182 1.182 7 C -0.354 4.354 8 H 0.078 0.922 9 N -0.360 5.360 10 C 0.012 3.988 11 C -0.219 4.219 12 C -0.192 4.192 13 H 0.122 0.878 14 C -0.119 4.119 15 C -0.151 4.151 16 C -0.132 4.132 17 H 0.067 0.933 18 H 0.199 0.801 19 H 0.120 0.880 20 H 0.100 0.900 21 H 0.104 0.896 22 H 0.100 0.900 23 H 0.076 0.924 24 H 0.109 0.891 25 H 0.087 0.913 26 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.130 -5.911 -1.797 14.511 hybrid contribution -0.239 1.373 0.236 1.414 sum 12.890 -4.538 -1.561 13.754 Atomic orbital electron populations 1.69873 1.06993 1.26679 1.59787 1.25482 0.96165 1.01137 1.02876 0.85404 0.78435 0.79799 0.78100 1.20359 1.21947 1.18202 1.18959 0.82098 0.93547 1.40831 0.92244 1.42029 1.02410 1.02500 1.89022 1.21318 0.90526 0.88663 0.98289 1.23615 1.04200 1.01746 0.92296 1.23691 0.94092 1.01577 0.99849 0.87846 1.21911 0.97764 0.96947 0.95243 1.22558 0.93147 1.02087 0.97271 1.21945 0.98574 0.96312 0.96352 0.93266 0.80075 0.88044 0.90041 0.89613 0.89964 0.92372 0.89122 0.91259 0.93547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.05 13.97 21.65 0.30 -63.75 15 2 C -0.07 -3.94 5.50 84.86 0.47 -3.48 15 3 Si 0.96 46.63 27.74 68.60 1.90 48.53 15 4 H -0.28 -13.18 7.11 99.48 0.71 -12.47 15 5 H -0.29 -14.35 7.11 99.48 0.71 -13.65 15 6 H -0.26 -11.50 6.52 99.48 0.65 -10.85 15 7 C -0.22 -13.12 9.74 84.04 0.82 -12.30 15 8 H 0.06 3.81 7.69 -2.91 -0.02 3.79 15 9 N -0.72 -35.43 5.51 -300.06 -1.65 -37.09 15 10 C 0.10 4.13 3.22 4.33 0.01 4.14 15 11 C -0.18 -6.03 10.06 30.59 0.31 -5.73 15 12 C -0.17 -5.34 6.94 -10.07 -0.07 -5.41 15 13 H 0.10 3.10 8.14 -2.39 -0.02 3.08 15 14 C -0.08 -1.95 6.63 31.67 0.21 -1.74 15 15 C -0.11 -3.07 6.89 31.74 0.22 -2.85 15 16 C -0.09 -3.38 6.17 31.53 0.19 -3.18 15 17 H 0.26 16.00 8.31 -92.71 -0.77 15.23 15 18 H 0.37 17.34 5.89 -92.71 -0.55 16.79 15 19 H 0.10 2.99 8.14 -2.39 -0.02 2.97 15 20 H 0.08 2.87 8.14 -2.39 -0.02 2.86 15 21 H 0.09 1.70 8.14 -2.39 -0.02 1.68 15 22 H 0.08 1.70 8.14 -2.39 -0.02 1.68 15 23 H 0.06 1.66 8.14 -2.38 -0.02 1.64 15 24 H 0.09 1.96 8.14 -2.39 -0.02 1.94 15 25 H 0.07 2.29 8.14 -2.39 -0.02 2.27 15 26 H 0.05 1.99 7.36 -2.39 -0.02 1.97 15 Total: -1.00 -67.17 217.48 3.26 -63.91 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.55 Total: 18.94 kcal Atomic # 6 Polarization: -32.71 SS G_CDS: 2.16 Total: -30.55 kcal Atomic # 7 Polarization: -99.48 SS G_CDS: -1.35 Total: -100.84 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 1.90 Total: 48.53 kcal Total: -67.17 3.26 -63.91 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575529772.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.145 kcal (2) G-P(sol) polarization free energy of solvation -67.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds