Wall clock time and date at job start Mon Mar 30 2020 01:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00194 * 2 1 4 4 H 1.48500 * 109.47517 * 270.00723 * 3 2 1 5 5 H 1.48502 * 109.46736 * 30.00497 * 3 2 1 6 6 H 1.48496 * 109.47375 * 150.00192 * 3 2 1 7 7 C 1.38810 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00204 * 359.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 C 1.53003 * 119.29956 * 110.04545 * 10 9 7 12 12 C 1.53000 * 60.37947 * 111.30617 * 11 10 9 13 13 H 1.09002 * 119.30006 * 248.69660 * 12 11 10 14 14 C 1.54265 * 118.19959 * 93.61741 * 12 11 10 15 15 C 1.54892 * 104.19675 * 272.21295 * 14 12 11 16 16 C 1.54268 * 117.41437 * 315.69975 * 10 9 7 17 17 H 0.96998 * 120.00381 * 359.97438 * 1 2 3 18 18 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 19 19 H 1.09001 * 117.45876 * 218.90763 * 11 10 9 20 20 H 1.08994 * 117.45861 * 3.70646 * 11 10 9 21 21 H 1.09001 * 110.48614 * 30.88750 * 14 12 11 22 22 H 1.08997 * 110.48759 * 153.52917 * 14 12 11 23 23 H 1.09003 * 110.75353 * 156.25877 * 15 14 12 24 24 H 1.09003 * 110.75100 * 279.44189 * 15 14 12 25 25 H 1.09007 * 110.48846 * 2.31310 * 16 10 9 26 26 H 1.08997 * 110.48620 * 124.95110 * 16 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1120 -2.4708 0.0046 11 6 4.8820 -2.8965 -1.2472 12 6 5.6504 -2.5066 0.0171 13 1 6.2386 -1.5889 0.0222 14 6 6.0572 -3.6262 0.9973 15 6 4.8358 -3.7690 1.9390 16 6 3.6188 -3.5715 0.9664 17 1 -0.4850 0.8400 0.0004 18 1 3.8646 -0.3621 -0.0007 19 1 4.8596 -3.9525 -1.5163 20 1 4.9050 -2.1990 -2.0845 21 1 6.2354 -4.5576 0.4598 22 1 6.9427 -3.3354 1.5624 23 1 4.8091 -4.7614 2.3893 24 1 4.8493 -2.9974 2.7088 25 1 2.7279 -3.2405 1.5003 26 1 3.4168 -4.4929 0.4202 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575529778.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:59 Heat of formation + Delta-G solvation = 32.722546 kcal Electronic energy + Delta-G solvation = -9537.833301 eV Core-core repulsion = 7810.289578 eV Total energy + Delta-G solvation = -1727.543723 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.87414 -33.64339 -31.27930 -30.14938 -27.19377 -23.43432 -21.95397 -19.90559 -18.38308 -17.49187 -15.65170 -14.53976 -14.11562 -13.25005 -12.74255 -12.64875 -12.38158 -11.73104 -11.18600 -10.95070 -10.66718 -10.55217 -10.42232 -10.14894 -9.91340 -9.56209 -9.18567 -8.62809 -7.18674 -5.78977 -3.13956 3.36372 3.39782 3.43966 4.33513 4.57115 5.01664 5.16911 5.24854 5.38846 5.59189 5.73373 5.93140 5.97912 6.09095 6.19794 6.29789 6.31317 6.39062 6.64613 6.74900 6.81495 6.96660 8.00057 8.41243 9.18575 9.91345 10.10876 11.39003 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.068143 B = 0.015064 C = 0.014085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.801088 B = 1858.286906 C = 1987.441534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.882 3.118 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.241 4.241 8 H 0.094 0.906 9 N -0.711 5.711 10 C 0.157 3.843 11 C -0.188 4.188 12 C -0.199 4.199 13 H 0.097 0.903 14 C -0.088 4.088 15 C -0.121 4.121 16 C -0.092 4.092 17 H 0.260 0.740 18 H 0.364 0.636 19 H 0.080 0.920 20 H 0.088 0.912 21 H 0.061 0.939 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.066 0.934 25 H 0.084 0.916 26 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.480 -5.459 1.626 11.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.190 4.190 3 Si 0.713 3.287 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.370 4.370 8 H 0.112 0.888 9 N -0.350 5.350 10 C 0.063 3.937 11 C -0.229 4.229 12 C -0.218 4.218 13 H 0.116 0.884 14 C -0.125 4.125 15 C -0.159 4.159 16 C -0.130 4.130 17 H 0.070 0.930 18 H 0.198 0.802 19 H 0.099 0.901 20 H 0.107 0.893 21 H 0.080 0.920 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.085 0.915 25 H 0.103 0.897 26 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.175 -5.469 1.656 11.670 hybrid contribution 0.647 1.382 -0.156 1.534 sum 10.822 -4.087 1.500 11.664 Atomic orbital electron populations 1.69688 1.05033 1.25883 1.57310 1.24657 0.95257 0.97147 1.01987 0.86574 0.79260 0.85064 0.77844 1.21026 1.21576 1.20337 1.19042 0.80141 0.94888 1.42976 0.88790 1.42094 1.03834 1.00633 1.88413 1.20822 0.87765 0.89275 0.95799 1.23639 1.05794 1.00690 0.92819 1.23491 0.97278 1.00434 1.00638 0.88448 1.21840 0.97492 0.97144 0.96074 1.23003 0.94436 1.00598 0.97818 1.22416 0.98142 0.96429 0.96030 0.92973 0.80210 0.90110 0.89313 0.92018 0.92125 0.92149 0.91540 0.89709 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.36 13.97 55.49 0.78 -28.59 15 2 C 0.01 0.16 5.50 -17.43 -0.10 0.06 15 3 Si 0.88 22.33 27.73 -169.99 -4.71 17.62 15 4 H -0.28 -7.14 7.11 56.52 0.40 -6.74 15 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 15 6 H -0.28 -6.66 6.52 56.52 0.37 -6.29 15 7 C -0.24 -6.88 9.72 -15.06 -0.15 -7.03 15 8 H 0.09 2.85 7.58 -52.49 -0.40 2.45 15 9 N -0.71 -17.58 5.52 -46.19 -0.25 -17.84 15 10 C 0.16 3.23 3.19 -130.70 -0.42 2.81 15 11 C -0.19 -3.41 10.04 -26.73 -0.27 -3.68 15 12 C -0.20 -3.42 6.94 -89.50 -0.62 -4.04 15 13 H 0.10 1.65 8.14 -51.93 -0.42 1.23 15 14 C -0.09 -1.26 6.63 -25.07 -0.17 -1.43 15 15 C -0.12 -1.84 6.96 -23.54 -0.16 -2.00 15 16 C -0.09 -1.70 6.33 -23.88 -0.15 -1.85 15 17 H 0.26 7.80 8.31 -40.82 -0.34 7.46 15 18 H 0.36 8.87 5.89 -40.82 -0.24 8.63 15 19 H 0.08 1.32 8.14 -51.93 -0.42 0.90 15 20 H 0.09 1.64 8.14 -51.93 -0.42 1.22 15 21 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 22 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 23 H 0.06 0.78 8.14 -51.93 -0.42 0.35 15 24 H 0.07 1.04 8.14 -51.93 -0.42 0.62 15 25 H 0.08 1.77 7.25 -51.92 -0.38 1.39 15 26 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15 LS Contribution 217.42 15.07 3.28 3.28 Total: -1.00 -30.57 217.42 -6.51 -37.09 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -3.56 Total: 5.59 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: -2.03 Total: -17.15 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: 0.52 Total: -46.42 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.71 Total: 17.62 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -30.57 -6.51 -37.09 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575529778.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.809 kcal (2) G-P(sol) polarization free energy of solvation -30.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds