Wall clock time and date at job start Mon Mar 30 2020 01:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00194 * 2 1 4 4 H 1.48500 * 109.47517 * 270.00723 * 3 2 1 5 5 H 1.48502 * 109.46736 * 30.00497 * 3 2 1 6 6 H 1.48496 * 109.47375 * 150.00192 * 3 2 1 7 7 C 1.38810 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00204 * 359.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 C 1.53003 * 119.29956 * 110.04545 * 10 9 7 12 12 C 1.53000 * 60.37947 * 111.30617 * 11 10 9 13 13 H 1.09002 * 119.30006 * 248.69660 * 12 11 10 14 14 C 1.54265 * 118.19959 * 93.61741 * 12 11 10 15 15 C 1.54892 * 104.19675 * 272.21295 * 14 12 11 16 16 C 1.54268 * 117.41437 * 315.69975 * 10 9 7 17 17 H 0.96998 * 120.00381 * 359.97438 * 1 2 3 18 18 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 19 19 H 1.09001 * 117.45876 * 218.90763 * 11 10 9 20 20 H 1.08994 * 117.45861 * 3.70646 * 11 10 9 21 21 H 1.09001 * 110.48614 * 30.88750 * 14 12 11 22 22 H 1.08997 * 110.48759 * 153.52917 * 14 12 11 23 23 H 1.09003 * 110.75353 * 156.25877 * 15 14 12 24 24 H 1.09003 * 110.75100 * 279.44189 * 15 14 12 25 25 H 1.09007 * 110.48846 * 2.31310 * 16 10 9 26 26 H 1.08997 * 110.48620 * 124.95110 * 16 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1120 -2.4708 0.0046 11 6 4.8820 -2.8965 -1.2472 12 6 5.6504 -2.5066 0.0171 13 1 6.2386 -1.5889 0.0222 14 6 6.0572 -3.6262 0.9973 15 6 4.8358 -3.7690 1.9390 16 6 3.6188 -3.5715 0.9664 17 1 -0.4850 0.8400 0.0004 18 1 3.8646 -0.3621 -0.0007 19 1 4.8596 -3.9525 -1.5163 20 1 4.9050 -2.1990 -2.0845 21 1 6.2354 -4.5576 0.4598 22 1 6.9427 -3.3354 1.5624 23 1 4.8091 -4.7614 2.3893 24 1 4.8493 -2.9974 2.7088 25 1 2.7279 -3.2405 1.5003 26 1 3.4168 -4.4929 0.4202 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575529778.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:59 Heat of formation + Delta-G solvation = 12.698126 kcal Electronic energy + Delta-G solvation = -9538.701625 eV Core-core repulsion = 7810.289578 eV Total energy + Delta-G solvation = -1728.412047 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.32525 -35.64144 -33.08848 -31.82927 -28.60755 -25.53362 -23.31903 -21.27922 -20.05541 -19.52147 -17.28855 -16.31509 -15.68085 -14.89940 -14.71918 -14.00265 -13.93171 -13.39010 -13.09181 -12.76341 -12.23467 -12.04554 -11.77631 -11.72240 -11.62751 -11.53668 -10.85885 -10.40246 -9.15095 -8.04883 -5.37720 1.34078 1.37301 1.44569 2.45001 2.88051 3.28689 3.40983 3.75241 3.95226 4.10581 4.39896 4.58214 4.64108 4.77251 4.92373 5.00360 5.02087 5.08950 5.25122 5.35360 5.46565 5.56493 5.78496 6.20226 7.04147 7.81960 7.99737 9.16531 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.068143 B = 0.015064 C = 0.014085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.801088 B = 1858.286906 C = 1987.441534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.065 4.065 3 Si 0.955 3.045 4 H -0.279 1.279 5 H -0.293 1.293 6 H -0.256 1.256 7 C -0.224 4.224 8 H 0.060 0.940 9 N -0.719 5.719 10 C 0.103 3.897 11 C -0.181 4.181 12 C -0.171 4.171 13 H 0.103 0.897 14 C -0.081 4.081 15 C -0.112 4.112 16 C -0.095 4.095 17 H 0.258 0.742 18 H 0.365 0.635 19 H 0.101 0.899 20 H 0.081 0.919 21 H 0.082 0.918 22 H 0.085 0.915 23 H 0.088 0.912 24 H 0.058 0.942 25 H 0.046 0.954 26 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.341 -5.864 1.844 14.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.256 4.256 3 Si 0.782 3.218 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.181 1.181 7 C -0.355 4.355 8 H 0.078 0.922 9 N -0.359 5.359 10 C 0.012 3.988 11 C -0.222 4.222 12 C -0.191 4.191 13 H 0.122 0.878 14 C -0.119 4.119 15 C -0.150 4.150 16 C -0.133 4.133 17 H 0.067 0.933 18 H 0.199 0.801 19 H 0.119 0.881 20 H 0.100 0.900 21 H 0.101 0.899 22 H 0.104 0.896 23 H 0.107 0.893 24 H 0.077 0.923 25 H 0.065 0.935 26 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 13.100 -5.917 1.872 14.496 hybrid contribution -0.236 1.379 -0.245 1.420 sum 12.864 -4.539 1.628 13.738 Atomic orbital electron populations 1.69868 1.06993 1.26687 1.59782 1.25477 0.96162 1.01136 1.02871 0.85410 0.78525 0.79816 0.78046 1.20507 1.21911 1.18058 1.18963 0.82101 0.93562 1.40828 0.92202 1.42042 1.02416 1.02529 1.88953 1.21331 0.90380 0.88575 0.98492 1.23645 1.04467 1.01741 0.92325 1.23695 0.94091 1.01557 0.99727 0.87847 1.21900 0.97695 0.96950 0.95311 1.22975 0.92945 1.02005 0.97074 1.22426 0.98317 0.96184 0.96395 0.93264 0.80086 0.88085 0.90013 0.89932 0.89599 0.89325 0.92311 0.93488 0.91001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.03 13.97 21.65 0.30 -63.73 15 2 C -0.07 -3.93 5.50 84.86 0.47 -3.47 15 3 Si 0.95 46.60 27.73 68.60 1.90 48.50 15 4 H -0.28 -13.29 7.11 99.48 0.71 -12.58 15 5 H -0.29 -14.32 7.11 99.48 0.71 -13.61 15 6 H -0.26 -11.41 6.52 99.48 0.65 -10.76 15 7 C -0.22 -13.12 9.72 84.03 0.82 -12.30 15 8 H 0.06 3.83 7.58 -2.91 -0.02 3.81 15 9 N -0.72 -35.40 5.52 -300.06 -1.66 -37.06 15 10 C 0.10 4.13 3.19 4.33 0.01 4.14 15 11 C -0.18 -6.12 10.04 30.60 0.31 -5.81 15 12 C -0.17 -5.30 6.94 -10.07 -0.07 -5.37 15 13 H 0.10 3.10 8.14 -2.39 -0.02 3.08 15 14 C -0.08 -1.95 6.63 31.67 0.21 -1.74 15 15 C -0.11 -3.06 6.96 32.66 0.23 -2.84 15 16 C -0.09 -3.44 6.33 32.44 0.21 -3.23 15 17 H 0.26 15.99 8.31 -92.71 -0.77 15.22 15 18 H 0.37 17.32 5.89 -92.71 -0.55 16.78 15 19 H 0.10 2.98 8.14 -2.39 -0.02 2.96 15 20 H 0.08 2.86 8.14 -2.39 -0.02 2.84 15 21 H 0.08 1.71 8.14 -2.39 -0.02 1.69 15 22 H 0.09 1.71 8.14 -2.39 -0.02 1.69 15 23 H 0.09 1.93 8.14 -2.39 -0.02 1.91 15 24 H 0.06 1.69 8.14 -2.39 -0.02 1.67 15 25 H 0.05 2.02 7.25 -2.38 -0.02 2.01 15 26 H 0.07 2.37 8.14 -2.39 -0.02 2.35 15 Total: -1.00 -67.12 217.42 3.28 -63.85 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 0.55 Total: 19.05 kcal Atomic # 6 Polarization: -32.79 SS G_CDS: 2.18 Total: -30.61 kcal Atomic # 7 Polarization: -99.43 SS G_CDS: -1.35 Total: -100.79 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 1.90 Total: 48.50 kcal Total: -67.12 3.28 -63.85 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575529778.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.544 kcal (2) G-P(sol) polarization free energy of solvation -67.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds