Wall clock time and date at job start Mon Mar 30 2020 01:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 110.94361 * 2 1 4 4 C 1.36940 * 119.99797 * 56.01344 * 3 2 1 5 5 H 1.07996 * 120.00101 * 359.97438 * 4 3 2 6 6 C 1.38810 * 119.99459 * 180.02562 * 4 3 2 7 7 N 1.31623 * 119.99867 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00236 * 359.97438 * 6 4 3 9 9 H 1.48502 * 109.47005 * 90.00738 * 8 6 4 10 10 H 1.48504 * 109.47416 * 209.99907 * 8 6 4 11 11 H 1.48498 * 109.47245 * 330.00496 * 8 6 4 12 12 C 1.54637 * 111.03596 * 236.01208 * 2 1 3 13 13 C 1.51104 * 104.82203 * 266.65909 * 12 2 1 14 14 C 1.30525 * 111.10650 * 343.50481 * 13 12 2 15 15 C 1.51094 * 111.10287 * 0.02562 * 14 13 12 16 16 H 1.08998 * 109.47759 * 183.98699 * 1 2 3 17 17 H 1.09000 * 109.47061 * 303.98800 * 1 2 3 18 18 H 1.09001 * 109.47089 * 63.98556 * 1 2 3 19 19 H 0.97000 * 119.99347 * 236.01078 * 3 2 1 20 20 H 0.96996 * 119.99807 * 179.97438 * 7 6 4 21 21 H 1.09002 * 110.38719 * 147.78988 * 12 2 1 22 22 H 1.09000 * 110.38599 * 25.52408 * 12 2 1 23 23 H 1.08001 * 124.43953 * 163.48841 * 13 12 2 24 24 H 1.07999 * 124.44678 * 179.97438 * 14 13 12 25 25 H 1.08999 * 110.38926 * 135.24917 * 15 14 13 26 26 H 1.09008 * 110.38956 * 257.50891 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0536 1.3682 0.0000 4 6 1.6792 2.2446 0.9834 5 1 0.9976 1.9273 1.7586 6 6 2.1750 3.5412 0.9830 7 7 1.8156 4.3835 1.9284 8 14 3.3534 4.0902 -0.3584 9 1 2.5814 4.6502 -1.4967 10 1 4.2663 5.1305 0.1799 11 1 4.1493 2.9265 -0.8248 12 6 2.0850 -0.8068 -1.1967 13 6 2.3033 -2.2006 -0.6553 14 6 2.3044 -2.2030 0.6499 15 6 2.0865 -0.8114 1.1966 16 1 -0.3634 -1.0251 0.0714 17 1 -0.3633 0.5745 0.8521 18 1 -0.3633 0.4507 -0.9236 19 1 2.6656 1.6532 -0.6966 20 1 2.1623 5.2893 1.9284 21 1 3.0282 -0.3799 -1.5377 22 1 1.3608 -0.8249 -2.0111 23 1 2.4400 -3.0794 -1.2681 24 1 2.4421 -3.0841 1.2591 25 1 1.3621 -0.8324 2.0109 26 1 3.0298 -0.3860 1.5395 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575561929.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:35 Heat of formation + Delta-G solvation = 28.260387 kcal Electronic energy + Delta-G solvation = -9597.281903 eV Core-core repulsion = 7869.544686 eV Total energy + Delta-G solvation = -1727.737217 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.62783 -33.85230 -31.26071 -28.69076 -27.69198 -25.25236 -22.89697 -18.79353 -18.36091 -17.25219 -15.61582 -14.62520 -14.03747 -13.01442 -12.86296 -12.56003 -11.98293 -11.68369 -11.29521 -11.06999 -10.90139 -10.68465 -10.60608 -10.27060 -9.82223 -9.46713 -8.90229 -8.44583 -7.23663 -5.73206 -3.08322 2.65485 3.39934 3.43075 3.47573 4.62411 5.13427 5.16508 5.43350 5.57346 5.71218 5.77539 6.06737 6.15124 6.28926 6.39144 6.53752 6.60847 6.73981 6.79728 7.01982 7.14651 7.33264 8.05102 8.47028 9.25141 9.98071 10.18374 11.45272 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.067673 B = 0.015610 C = 0.014475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.655714 B = 1793.240323 C = 1933.938578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.202 3.798 3 N -0.741 5.741 4 C -0.236 4.236 5 H 0.092 0.908 6 C 0.002 3.998 7 N -0.936 5.936 8 Si 0.883 3.117 9 H -0.285 1.285 10 H -0.292 1.292 11 H -0.278 1.278 12 C -0.102 4.102 13 C -0.177 4.177 14 C -0.159 4.159 15 C -0.112 4.112 16 H 0.042 0.958 17 H 0.062 0.938 18 H 0.049 0.951 19 H 0.361 0.639 20 H 0.258 0.742 21 H 0.071 0.929 22 H 0.065 0.935 23 H 0.115 0.885 24 H 0.113 0.887 25 H 0.062 0.938 26 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.628 -10.716 -5.169 11.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.111 3.889 3 N -0.383 5.383 4 C -0.366 4.366 5 H 0.110 0.890 6 C -0.193 4.193 7 N -0.584 5.584 8 Si 0.713 3.287 9 H -0.212 1.212 10 H -0.218 1.218 11 H -0.204 1.204 12 C -0.140 4.140 13 C -0.195 4.195 14 C -0.177 4.177 15 C -0.151 4.151 16 H 0.061 0.939 17 H 0.081 0.919 18 H 0.068 0.932 19 H 0.195 0.805 20 H 0.069 0.931 21 H 0.089 0.911 22 H 0.084 0.916 23 H 0.133 0.867 24 H 0.131 0.869 25 H 0.081 0.919 26 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.524 -10.567 -4.972 11.690 hybrid contribution 0.918 0.453 -0.847 1.328 sum 1.442 -10.114 -5.819 11.757 Atomic orbital electron populations 1.22022 0.96128 0.99600 1.02215 1.20350 0.92346 0.84495 0.91673 1.42786 1.55289 1.08320 1.31954 1.19029 1.22825 0.91102 1.03617 0.89038 1.24663 1.00273 0.96284 0.98111 1.69700 1.48403 1.05807 1.34483 0.86569 0.81559 0.78132 0.82404 1.21162 1.21827 1.20377 1.21595 1.00739 0.93092 0.98545 1.23114 1.02780 0.97412 0.96227 1.23388 0.99797 0.98288 0.96229 1.22049 1.01727 0.91739 0.99631 0.93917 0.91895 0.93226 0.80527 0.93145 0.91064 0.91610 0.86729 0.86866 0.91940 0.90188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 8.47 37.16 0.31 -2.35 15 2 C 0.20 4.03 1.10 -129.95 -0.14 3.89 15 3 N -0.74 -17.80 4.99 -45.50 -0.23 -18.03 15 4 C -0.24 -6.63 9.55 -15.06 -0.14 -6.78 15 5 H 0.09 2.75 7.30 -52.49 -0.38 2.37 15 6 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 15 7 N -0.94 -29.56 13.97 55.49 0.78 -28.79 15 8 Si 0.88 22.34 27.73 -169.99 -4.71 17.62 15 9 H -0.28 -7.17 7.11 56.52 0.40 -6.76 15 10 H -0.29 -7.49 7.11 56.52 0.40 -7.09 15 11 H -0.28 -6.64 6.52 56.52 0.37 -6.27 15 12 C -0.10 -1.71 6.03 -26.82 -0.16 -1.88 15 13 C -0.18 -2.62 10.78 -35.70 -0.38 -3.01 15 14 C -0.16 -2.45 10.78 -35.70 -0.38 -2.84 15 15 C -0.11 -2.11 5.83 -26.68 -0.16 -2.26 15 16 H 0.04 0.70 8.14 -51.93 -0.42 0.27 15 17 H 0.06 1.31 7.06 -51.93 -0.37 0.94 15 18 H 0.05 0.91 8.14 -51.93 -0.42 0.49 15 19 H 0.36 8.56 5.40 -40.82 -0.22 8.34 15 20 H 0.26 7.79 8.31 -40.82 -0.34 7.46 15 21 H 0.07 1.21 7.82 -51.93 -0.41 0.81 15 22 H 0.07 1.01 7.91 -51.93 -0.41 0.60 15 23 H 0.11 1.40 8.06 -52.49 -0.42 0.98 15 24 H 0.11 1.48 8.06 -52.49 -0.42 1.06 15 25 H 0.06 1.17 7.91 -51.93 -0.41 0.76 15 26 H 0.08 1.65 8.08 -51.92 -0.42 1.23 15 LS Contribution 217.65 15.07 3.28 3.28 Total: -1.00 -30.48 217.65 -5.52 -35.99 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -3.48 Total: 5.18 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -1.15 Total: -15.26 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: 0.55 Total: -46.82 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.71 Total: 17.62 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -30.48 -5.52 -35.99 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575561929.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.255 kcal (2) G-P(sol) polarization free energy of solvation -30.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds