Wall clock time and date at job start Mon Mar 30 2020 01:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 110.94361 * 2 1 4 4 C 1.36940 * 119.99797 * 56.01344 * 3 2 1 5 5 H 1.07996 * 120.00101 * 359.97438 * 4 3 2 6 6 C 1.38810 * 119.99459 * 180.02562 * 4 3 2 7 7 N 1.31623 * 119.99867 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00236 * 359.97438 * 6 4 3 9 9 H 1.48502 * 109.47005 * 90.00738 * 8 6 4 10 10 H 1.48504 * 109.47416 * 209.99907 * 8 6 4 11 11 H 1.48498 * 109.47245 * 330.00496 * 8 6 4 12 12 C 1.54637 * 111.03596 * 236.01208 * 2 1 3 13 13 C 1.51104 * 104.82203 * 266.65909 * 12 2 1 14 14 C 1.30525 * 111.10650 * 343.50481 * 13 12 2 15 15 C 1.51094 * 111.10287 * 0.02562 * 14 13 12 16 16 H 1.08998 * 109.47759 * 183.98699 * 1 2 3 17 17 H 1.09000 * 109.47061 * 303.98800 * 1 2 3 18 18 H 1.09001 * 109.47089 * 63.98556 * 1 2 3 19 19 H 0.97000 * 119.99347 * 236.01078 * 3 2 1 20 20 H 0.96996 * 119.99807 * 179.97438 * 7 6 4 21 21 H 1.09002 * 110.38719 * 147.78988 * 12 2 1 22 22 H 1.09000 * 110.38599 * 25.52408 * 12 2 1 23 23 H 1.08001 * 124.43953 * 163.48841 * 13 12 2 24 24 H 1.07999 * 124.44678 * 179.97438 * 14 13 12 25 25 H 1.08999 * 110.38926 * 135.24917 * 15 14 13 26 26 H 1.09008 * 110.38956 * 257.50891 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0536 1.3682 0.0000 4 6 1.6792 2.2446 0.9834 5 1 0.9976 1.9273 1.7586 6 6 2.1750 3.5412 0.9830 7 7 1.8156 4.3835 1.9284 8 14 3.3534 4.0902 -0.3584 9 1 2.5814 4.6502 -1.4967 10 1 4.2663 5.1305 0.1799 11 1 4.1493 2.9265 -0.8248 12 6 2.0850 -0.8068 -1.1967 13 6 2.3033 -2.2006 -0.6553 14 6 2.3044 -2.2030 0.6499 15 6 2.0865 -0.8114 1.1966 16 1 -0.3634 -1.0251 0.0714 17 1 -0.3633 0.5745 0.8521 18 1 -0.3633 0.4507 -0.9236 19 1 2.6656 1.6532 -0.6966 20 1 2.1623 5.2893 1.9284 21 1 3.0282 -0.3799 -1.5377 22 1 1.3608 -0.8249 -2.0111 23 1 2.4400 -3.0794 -1.2681 24 1 2.4421 -3.0841 1.2591 25 1 1.3621 -0.8324 2.0109 26 1 3.0298 -0.3860 1.5395 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575561929.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:35 Heat of formation + Delta-G solvation = 8.230973 kcal Electronic energy + Delta-G solvation = -9598.150444 eV Core-core repulsion = 7869.544686 eV Total energy + Delta-G solvation = -1728.605757 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.09615 -35.73815 -33.25907 -30.43483 -29.07294 -26.84589 -24.86183 -20.39863 -20.00729 -19.02006 -17.14908 -16.34795 -15.81724 -14.84212 -14.54938 -14.38579 -13.68029 -12.99379 -12.89018 -12.79738 -12.77142 -12.31730 -12.08479 -11.93363 -11.77080 -11.37999 -10.95407 -9.71302 -9.30385 -7.99776 -5.32880 1.37409 1.40732 1.47396 1.47930 2.49805 3.30754 3.53081 3.81106 4.05291 4.26653 4.46739 4.61607 4.82365 4.93418 4.96680 5.05125 5.13935 5.17012 5.34683 5.57862 5.68228 5.83303 6.15806 6.26039 7.10610 7.87817 8.06665 9.22034 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.067673 B = 0.015610 C = 0.014475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.655714 B = 1793.240323 C = 1933.938578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.181 3.819 3 N -0.745 5.745 4 C -0.216 4.216 5 H 0.057 0.943 6 C -0.070 4.070 7 N -0.987 5.987 8 Si 0.954 3.046 9 H -0.279 1.279 10 H -0.298 1.298 11 H -0.253 1.253 12 C -0.101 4.101 13 C -0.158 4.158 14 C -0.166 4.166 15 C -0.114 4.114 16 H 0.071 0.929 17 H 0.030 0.970 18 H 0.052 0.948 19 H 0.365 0.635 20 H 0.256 0.744 21 H 0.071 0.929 22 H 0.085 0.915 23 H 0.154 0.846 24 H 0.142 0.858 25 H 0.050 0.950 26 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.396 -12.782 -7.282 14.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.092 3.908 3 N -0.388 5.388 4 C -0.347 4.347 5 H 0.075 0.925 6 C -0.261 4.261 7 N -0.639 5.639 8 Si 0.782 3.218 9 H -0.205 1.205 10 H -0.225 1.225 11 H -0.178 1.178 12 C -0.138 4.138 13 C -0.176 4.176 14 C -0.184 4.184 15 C -0.153 4.153 16 H 0.090 0.910 17 H 0.049 0.951 18 H 0.071 0.929 19 H 0.198 0.802 20 H 0.065 0.935 21 H 0.089 0.911 22 H 0.103 0.897 23 H 0.171 0.829 24 H 0.160 0.840 25 H 0.069 0.931 26 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.289 -12.696 -7.110 14.608 hybrid contribution 0.601 1.027 -0.143 1.198 sum 1.890 -11.669 -7.252 13.869 Atomic orbital electron populations 1.21945 0.95518 1.00902 1.00941 1.20765 0.92903 0.82928 0.94210 1.42820 1.55484 1.09550 1.30913 1.18940 1.20867 0.91658 1.03223 0.92453 1.25488 1.02988 0.96569 1.01016 1.69887 1.50648 1.06188 1.37136 0.85415 0.79190 0.78028 0.79181 1.20504 1.22487 1.17814 1.21584 1.01029 0.93724 0.97490 1.23329 1.00904 0.97319 0.96055 1.23361 1.01259 0.96933 0.96869 1.21941 1.00020 0.94280 0.99080 0.90996 0.95050 0.92887 0.80157 0.93520 0.91078 0.89700 0.82863 0.84045 0.93125 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.95 8.47 71.98 0.61 -4.34 15 2 C 0.18 6.98 1.10 4.82 0.01 6.99 15 3 N -0.74 -35.35 4.99 -297.88 -1.49 -36.84 15 4 C -0.22 -12.41 9.55 84.03 0.80 -11.61 15 5 H 0.06 3.63 7.30 -2.91 -0.02 3.61 15 6 C -0.07 -4.19 5.50 84.86 0.47 -3.72 15 7 N -0.99 -64.40 13.97 21.65 0.30 -64.10 15 8 Si 0.95 46.33 27.73 68.60 1.90 48.23 15 9 H -0.28 -13.18 7.11 99.48 0.71 -12.47 15 10 H -0.30 -14.69 7.11 99.48 0.71 -13.98 15 11 H -0.25 -11.14 6.52 99.48 0.65 -10.49 15 12 C -0.10 -3.02 6.03 30.53 0.18 -2.84 15 13 C -0.16 -3.94 10.78 26.26 0.28 -3.66 15 14 C -0.17 -4.58 10.78 26.26 0.28 -4.29 15 15 C -0.11 -4.21 5.83 30.63 0.18 -4.03 15 16 H 0.07 2.20 8.14 -2.39 -0.02 2.18 15 17 H 0.03 1.32 7.06 -2.39 -0.02 1.30 15 18 H 0.05 1.88 8.14 -2.39 -0.02 1.86 15 19 H 0.36 16.62 5.40 -92.71 -0.50 16.12 15 20 H 0.26 15.93 8.31 -92.71 -0.77 15.16 15 21 H 0.07 2.17 7.82 -2.39 -0.02 2.15 15 22 H 0.08 2.24 7.91 -2.39 -0.02 2.22 15 23 H 0.15 2.75 8.06 -2.91 -0.02 2.73 15 24 H 0.14 3.12 8.06 -2.91 -0.02 3.10 15 25 H 0.05 1.92 7.91 -2.39 -0.02 1.91 15 26 H 0.05 2.22 8.08 -2.38 -0.02 2.20 15 Total: -1.00 -66.75 217.65 4.12 -62.63 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.59 Total: 17.58 kcal Atomic # 6 Polarization: -30.31 SS G_CDS: 2.81 Total: -27.50 kcal Atomic # 7 Polarization: -99.75 SS G_CDS: -1.18 Total: -100.94 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.90 Total: 48.23 kcal Total: -66.75 4.12 -62.63 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575561929.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.861 kcal (2) G-P(sol) polarization free energy of solvation -66.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds