Wall clock time and date at job start Mon Mar 30 2020 01:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35494 * 126.97935 * 2 1 4 4 N 1.30526 * 107.30545 * 179.83284 * 3 2 1 5 5 N 1.28600 * 109.67197 * 0.43817 * 4 3 2 6 6 C 1.30517 * 109.67250 * 359.72320 * 5 4 3 7 7 C 1.50698 * 126.34522 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47164 * 269.95524 * 7 6 5 9 9 H 1.08000 * 119.99821 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00094 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99671 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00066 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46982 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.46972 * 119.99766 * 12 10 8 15 15 H 1.48496 * 109.47051 * 239.99909 * 12 10 8 16 16 H 1.09002 * 109.47391 * 269.68706 * 1 2 3 17 17 H 1.09001 * 109.46813 * 149.68762 * 1 2 3 18 18 H 1.09004 * 109.47041 * 29.68889 * 1 2 3 19 19 H 1.07996 * 126.34608 * 359.97438 * 3 2 1 20 20 H 1.08995 * 109.47086 * 29.95554 * 7 6 5 21 21 H 1.09004 * 109.47234 * 149.95544 * 7 6 5 22 22 H 0.96999 * 119.99543 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5091 0.6430 0.0036 5 7 3.5091 -0.6430 -0.0034 6 6 2.2801 -1.0824 -0.0059 7 6 1.8477 -2.5260 -0.0132 8 6 1.7028 -2.9997 -1.4365 9 1 1.9042 -2.3232 -2.2539 10 6 1.3133 -4.2968 -1.6950 11 7 1.0686 -5.1207 -0.6995 12 14 1.1330 -4.8838 -3.4592 13 1 1.4646 -3.7727 -4.3869 14 1 2.0573 -6.0211 -3.6993 15 1 -0.2655 -5.3246 -3.6937 16 1 -0.3634 -0.0056 1.0276 17 1 -0.3633 -0.8872 -0.5187 18 1 -0.3633 0.8928 -0.5090 19 1 1.9701 2.1169 -0.0004 20 1 2.5963 -3.1320 0.4970 21 1 0.8911 -2.6214 0.5006 22 1 0.7949 -6.0334 -0.8814 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606244853.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:25 Heat of formation + Delta-G solvation = 68.038896 kcal Electronic energy + Delta-G solvation = -9185.586710 eV Core-core repulsion = 7356.034075 eV Total energy + Delta-G solvation = -1829.552635 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.075 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -42.25787 -34.42893 -33.39763 -30.88193 -27.59987 -26.92958 -23.48648 -21.54467 -19.88930 -16.66722 -16.35332 -15.36077 -14.67369 -14.47897 -13.12398 -12.94893 -12.41219 -12.11179 -11.59211 -10.99404 -10.83543 -10.68347 -10.06537 -9.68150 -9.53778 -9.48179 -8.56502 -8.24833 -6.18818 -4.23570 2.62016 3.22870 3.23938 3.31720 3.36942 3.72317 4.35346 5.07053 5.11220 5.18156 5.45189 5.61768 5.79338 6.06770 6.53049 6.92273 7.23936 7.42897 7.63153 7.76358 8.09317 8.79152 9.41205 9.56976 10.91311 Molecular weight = 167.08amu Principal moments of inertia in cm(-1) A = 0.070069 B = 0.013849 C = 0.013499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.508696 B = 2021.308333 C = 2073.784717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.482 5.482 3 C 0.110 3.890 4 N -0.310 5.310 5 N -0.321 5.321 6 C 0.232 3.768 7 C 0.095 3.905 8 C -0.517 4.517 9 H 0.058 0.942 10 C 0.063 3.937 11 N -0.890 5.890 12 Si 0.901 3.099 13 H -0.272 1.272 14 H -0.280 1.280 15 H -0.282 1.282 16 H 0.073 0.927 17 H 0.101 0.899 18 H 0.080 0.920 19 H 0.206 0.794 20 H 0.056 0.944 21 H 0.038 0.962 22 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.044 7.630 0.632 9.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.174 5.174 3 C -0.177 4.177 4 N -0.149 5.149 5 N -0.161 5.161 6 C -0.035 4.035 7 C 0.055 3.945 8 C -0.556 4.556 9 H 0.076 0.924 10 C -0.139 4.139 11 N -0.528 5.528 12 Si 0.728 3.272 13 H -0.197 1.197 14 H -0.206 1.206 15 H -0.209 1.209 16 H 0.091 0.909 17 H 0.120 0.880 18 H 0.099 0.901 19 H 0.222 0.778 20 H 0.074 0.926 21 H 0.056 0.944 22 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.588 7.473 0.689 8.318 hybrid contribution -1.645 -0.208 -0.949 1.910 sum -5.233 7.265 -0.260 8.957 Atomic orbital electron populations 1.21994 0.76133 1.05152 1.03301 1.46208 1.08954 1.06988 1.55243 1.26081 0.87994 0.94587 1.09063 1.74090 1.18238 1.04562 1.17991 1.74236 1.18028 1.02036 1.21759 1.26162 0.86133 0.93815 0.97391 1.17917 0.97690 0.79771 0.99089 1.20932 1.46937 0.96947 0.90790 0.92400 1.24960 0.94917 0.96345 0.97718 1.69950 1.45832 1.06139 1.30926 0.86385 0.77708 0.78907 0.84183 1.19680 1.20628 1.20853 0.90869 0.88027 0.90115 0.77751 0.92570 0.94375 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.06 10.89 59.85 0.65 1.71 14 2 N -0.48 -9.06 3.15 -122.69 -0.39 -9.45 14 3 C 0.11 1.97 12.74 -89.94 -1.15 0.82 14 4 N -0.31 -6.92 12.21 29.69 0.36 -6.55 14 5 N -0.32 -8.06 12.21 32.80 0.40 -7.66 14 6 C 0.23 5.44 7.22 -154.99 -1.12 4.33 14 7 C 0.09 2.41 5.15 -29.03 -0.15 2.26 14 8 C -0.52 -14.19 9.09 -34.44 -0.31 -14.51 14 9 H 0.06 1.63 7.74 -52.49 -0.41 1.22 14 10 C 0.06 1.73 5.46 -17.82 -0.10 1.63 14 11 N -0.89 -25.21 13.29 55.43 0.74 -24.47 14 12 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 14 13 H -0.27 -6.35 7.11 56.52 0.40 -5.95 14 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 14 15 H -0.28 -6.41 7.11 56.52 0.40 -6.01 14 16 H 0.07 0.84 8.14 -51.93 -0.42 0.42 14 17 H 0.10 1.54 7.81 -51.93 -0.41 1.13 14 18 H 0.08 0.81 8.14 -51.93 -0.42 0.39 14 19 H 0.21 2.48 8.06 -52.49 -0.42 2.06 14 20 H 0.06 1.54 8.14 -51.93 -0.42 1.12 14 21 H 0.04 0.95 7.86 -51.93 -0.41 0.54 14 22 H 0.26 7.05 8.31 -40.82 -0.34 6.71 14 LS Contribution 206.48 15.07 3.11 3.11 Total: -1.00 -32.27 206.48 -5.01 -37.29 By element: Atomic # 1 Polarization: -2.46 SS G_CDS: -2.05 Total: -4.51 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -2.17 Total: -3.76 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: 1.11 Total: -48.14 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 3.11 Total: 3.11 kcal Total: -32.27 -5.01 -37.29 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606244853.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.327 kcal (2) G-P(sol) polarization free energy of solvation -32.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds