Wall clock time and date at job start Mon Mar 30 2020 01:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35494 * 126.97935 * 2 1 4 4 N 1.30526 * 107.30545 * 179.83284 * 3 2 1 5 5 N 1.28600 * 109.67197 * 0.43817 * 4 3 2 6 6 C 1.30517 * 109.67250 * 359.72320 * 5 4 3 7 7 C 1.50698 * 126.34522 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47164 * 269.95524 * 7 6 5 9 9 H 1.08000 * 119.99821 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00094 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99671 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00066 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46982 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.46972 * 119.99766 * 12 10 8 15 15 H 1.48496 * 109.47051 * 239.99909 * 12 10 8 16 16 H 1.09002 * 109.47391 * 269.68706 * 1 2 3 17 17 H 1.09001 * 109.46813 * 149.68762 * 1 2 3 18 18 H 1.09004 * 109.47041 * 29.68889 * 1 2 3 19 19 H 1.07996 * 126.34608 * 359.97438 * 3 2 1 20 20 H 1.08995 * 109.47086 * 29.95554 * 7 6 5 21 21 H 1.09004 * 109.47234 * 149.95544 * 7 6 5 22 22 H 0.96999 * 119.99543 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5091 0.6430 0.0036 5 7 3.5091 -0.6430 -0.0034 6 6 2.2801 -1.0824 -0.0059 7 6 1.8477 -2.5260 -0.0132 8 6 1.7028 -2.9997 -1.4365 9 1 1.9042 -2.3232 -2.2539 10 6 1.3133 -4.2968 -1.6950 11 7 1.0686 -5.1207 -0.6995 12 14 1.1330 -4.8838 -3.4592 13 1 1.4646 -3.7727 -4.3869 14 1 2.0573 -6.0211 -3.6993 15 1 -0.2655 -5.3246 -3.6937 16 1 -0.3634 -0.0056 1.0276 17 1 -0.3633 -0.8872 -0.5187 18 1 -0.3633 0.8928 -0.5090 19 1 1.9701 2.1169 -0.0004 20 1 2.5963 -3.1320 0.4970 21 1 0.8911 -2.6214 0.5006 22 1 0.7949 -6.0334 -0.8814 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606244853.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:24 Heat of formation + Delta-G solvation = 47.406036 kcal Electronic energy + Delta-G solvation = -9186.481417 eV Core-core repulsion = 7356.034075 eV Total energy + Delta-G solvation = -1830.447343 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 167.075 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -43.86462 -36.02191 -35.33425 -32.75323 -29.42785 -28.26178 -25.50174 -23.05919 -21.57821 -18.70654 -17.82837 -16.95312 -16.58984 -15.97231 -14.79942 -14.40768 -14.10089 -13.68849 -13.39523 -12.83274 -12.68357 -12.42752 -11.99747 -11.69812 -11.20064 -10.94800 -10.65835 -9.98977 -8.28007 -6.41093 1.07447 1.39315 1.42602 1.54190 1.84585 2.03581 2.39811 3.05131 3.75841 3.99044 4.02884 4.42295 4.46474 4.74044 5.01352 5.13935 5.37170 5.42403 5.63047 5.97539 6.20703 6.65684 7.27981 7.92657 8.82526 Molecular weight = 167.08amu Principal moments of inertia in cm(-1) A = 0.070069 B = 0.013849 C = 0.013499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.508696 B = 2021.308333 C = 2073.784717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.478 5.478 3 C 0.147 3.853 4 N -0.355 5.355 5 N -0.362 5.362 6 C 0.206 3.794 7 C 0.108 3.892 8 C -0.533 4.533 9 H 0.046 0.954 10 C 0.018 3.982 11 N -0.920 5.920 12 Si 0.968 3.032 13 H -0.272 1.272 14 H -0.278 1.278 15 H -0.267 1.267 16 H 0.097 0.903 17 H 0.080 0.920 18 H 0.127 0.873 19 H 0.269 0.731 20 H 0.022 0.978 21 H 0.038 0.962 22 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.437 9.057 -0.139 11.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.168 5.168 3 C -0.141 4.141 4 N -0.193 5.193 5 N -0.202 5.202 6 C -0.063 4.063 7 C 0.068 3.932 8 C -0.572 4.572 9 H 0.064 0.936 10 C -0.182 4.182 11 N -0.559 5.559 12 Si 0.792 3.208 13 H -0.197 1.197 14 H -0.204 1.204 15 H -0.192 1.192 16 H 0.115 0.885 17 H 0.099 0.901 18 H 0.145 0.855 19 H 0.284 0.716 20 H 0.040 0.960 21 H 0.057 0.943 22 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.002 8.908 -0.073 10.216 hybrid contribution -1.252 -0.550 -0.663 1.520 sum -6.254 8.357 -0.736 10.464 Atomic orbital electron populations 1.22381 0.72985 1.06456 1.05319 1.46435 1.10781 1.05767 1.53845 1.27197 0.86435 0.96384 1.04129 1.73991 1.20996 1.03435 1.20869 1.74114 1.19436 1.03818 1.22807 1.25589 0.86873 0.94061 0.99793 1.17537 0.96500 0.81254 0.97894 1.21086 1.47393 0.97341 0.91341 0.93581 1.25775 0.94266 0.96270 1.01908 1.70039 1.46212 1.06614 1.33016 0.85353 0.78317 0.78128 0.78952 1.19668 1.20389 1.19224 0.88477 0.90097 0.85501 0.71593 0.95971 0.94345 0.92064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.67 10.89 127.77 1.39 3.06 14 2 N -0.48 -16.91 3.15 -542.07 -1.71 -18.61 14 3 C 0.15 4.74 12.74 180.11 2.30 7.03 14 4 N -0.35 -15.46 12.21 -59.99 -0.73 -16.19 14 5 N -0.36 -18.42 12.21 -50.16 -0.61 -19.04 14 6 C 0.21 9.73 7.22 137.98 1.00 10.73 14 7 C 0.11 5.65 5.15 29.10 0.15 5.80 14 8 C -0.53 -29.76 9.09 25.60 0.23 -29.52 14 9 H 0.05 2.62 7.74 -2.91 -0.02 2.60 14 10 C 0.02 0.97 5.46 84.65 0.46 1.44 14 11 N -0.92 -52.56 13.29 21.45 0.28 -52.28 14 12 Si 0.97 42.96 29.54 68.60 2.03 44.99 14 13 H -0.27 -11.97 7.11 99.48 0.71 -11.26 14 14 H -0.28 -12.20 7.11 99.48 0.71 -11.49 14 15 H -0.27 -11.15 7.11 99.48 0.71 -10.45 14 16 H 0.10 1.89 8.14 -2.39 -0.02 1.87 14 17 H 0.08 2.32 7.81 -2.39 -0.02 2.31 14 18 H 0.13 1.89 8.14 -2.38 -0.02 1.87 14 19 H 0.27 4.81 8.06 -2.91 -0.02 4.78 14 20 H 0.02 1.28 8.14 -2.39 -0.02 1.26 14 21 H 0.04 1.96 7.86 -2.39 -0.02 1.94 14 22 H 0.27 14.39 8.31 -92.71 -0.77 13.61 14 Total: -1.00 -71.54 206.48 6.00 -65.54 By element: Atomic # 1 Polarization: -4.16 SS G_CDS: 1.21 Total: -2.95 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: 5.53 Total: -1.46 kcal Atomic # 7 Polarization: -103.36 SS G_CDS: -2.77 Total: -106.13 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -71.54 6.00 -65.54 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606244853.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.950 kcal (2) G-P(sol) polarization free energy of solvation -71.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds