Wall clock time and date at job start Mon Mar 30 2020 01:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 H 1.08997 * 115.56295 * 9.34933 * 10 9 7 12 12 C 1.53126 * 117.51343 * 223.60512 * 10 9 7 13 13 C 1.52457 * 59.85847 * 252.55627 * 12 10 9 14 14 C 1.53256 * 128.58365 * 117.60034 * 13 12 10 15 15 C 1.53889 * 86.88067 * 114.94449 * 14 13 12 16 16 C 1.53260 * 128.58236 * 242.39910 * 13 12 10 17 17 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 18 18 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 19 19 H 1.08994 * 117.51226 * 0.02562 * 12 10 9 20 20 H 1.09004 * 117.50959 * 145.10569 * 12 10 9 21 21 H 1.08998 * 113.64705 * 229.43661 * 14 13 12 22 22 H 1.08991 * 113.64833 * 0.44702 * 14 13 12 23 23 H 1.08997 * 113.59085 * 270.39168 * 15 14 13 24 24 H 1.09005 * 113.58843 * 139.57178 * 15 14 13 25 25 H 1.08993 * 113.64557 * 359.55530 * 16 13 12 26 26 H 1.09001 * 113.64559 * 130.56015 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 3.1336 -3.5788 0.1603 12 6 1.5603 -4.7610 -0.9361 13 6 1.3478 -4.8802 0.5689 14 6 0.0282 -4.9442 1.3457 15 6 0.4328 -6.3728 1.7500 16 6 1.8936 -5.9417 1.5302 17 1 -0.4850 0.8401 0.0004 18 1 0.3557 -2.3880 0.0005 19 1 0.6881 -4.5432 -1.5524 20 1 2.3083 -5.4098 -1.3919 21 1 -0.0196 -4.2495 2.1843 22 1 -0.8559 -4.9037 0.7097 23 1 0.0935 -7.1367 1.0505 24 1 0.2008 -6.6148 2.7872 25 1 2.5048 -6.7007 1.0419 26 1 2.3650 -5.5246 2.4201 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642846598.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:35 Heat of formation + Delta-G solvation = 34.297524 kcal Electronic energy + Delta-G solvation = -9311.741214 eV Core-core repulsion = 7584.265787 eV Total energy + Delta-G solvation = -1727.475427 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.20942 -36.31164 -34.09874 -31.30457 -26.56194 -25.81382 -23.76809 -22.08273 -19.50412 -18.90193 -16.90547 -16.16371 -16.01801 -15.69987 -14.71603 -13.76803 -13.31645 -13.21762 -12.84545 -12.78588 -12.31886 -12.25856 -12.14136 -11.88901 -11.66091 -11.03087 -10.67005 -10.41407 -8.82638 -7.99891 -5.28264 1.46610 1.50510 1.56835 2.52586 3.04267 3.41870 3.52706 3.91217 4.00473 4.03476 4.31900 4.33883 4.66454 4.86524 4.88944 4.93627 4.97489 5.11012 5.21487 5.30714 5.47644 5.54956 5.61901 6.21903 7.26822 8.01839 8.25964 9.23384 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.089461 B = 0.011432 C = 0.011040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 312.911290 B = 2448.651985 C = 2535.634320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.075 4.075 3 Si 0.982 3.018 4 H -0.294 1.294 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.254 4.254 8 H 0.081 0.919 9 N -0.704 5.704 10 C 0.121 3.879 11 H 0.104 0.896 12 C -0.183 4.183 13 C -0.194 4.194 14 C -0.106 4.106 15 C -0.119 4.119 16 C -0.088 4.088 17 H 0.253 0.747 18 H 0.374 0.626 19 H 0.072 0.928 20 H 0.110 0.890 21 H 0.064 0.936 22 H 0.050 0.950 23 H 0.089 0.911 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.357 -10.520 2.142 11.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.267 4.267 3 Si 0.810 3.190 4 H -0.220 1.220 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.385 4.385 8 H 0.099 0.901 9 N -0.339 5.339 10 C 0.010 3.990 11 H 0.121 0.879 12 C -0.223 4.223 13 C -0.197 4.197 14 C -0.143 4.143 15 C -0.156 4.156 16 C -0.125 4.125 17 H 0.062 0.938 18 H 0.206 0.794 19 H 0.090 0.910 20 H 0.128 0.872 21 H 0.082 0.918 22 H 0.069 0.931 23 H 0.107 0.893 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.497 -10.331 2.149 11.117 hybrid contribution -0.321 1.118 -0.195 1.179 sum 3.176 -9.213 1.954 9.940 Atomic orbital electron populations 1.69835 1.06853 1.26477 1.58921 1.25683 0.96462 1.01475 1.03095 0.85089 0.77127 0.78424 0.78370 1.22031 1.20097 1.20120 1.19726 0.91782 0.84959 1.42072 0.90078 1.42046 1.05285 1.00416 1.86118 1.21124 0.94878 0.81438 1.01583 0.87866 1.23409 1.03333 1.04855 0.90742 1.23004 0.99750 1.01677 0.95274 1.22316 0.95232 0.98122 0.98665 1.22690 0.95886 0.95126 1.01909 1.22382 0.96791 0.95839 0.97494 0.93788 0.79416 0.90989 0.87219 0.91783 0.93125 0.89260 0.90224 0.90155 0.90115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.69 13.06 21.65 0.28 -60.40 15 2 C -0.08 -4.38 5.50 84.86 0.47 -3.92 15 3 Si 0.98 46.48 29.55 68.60 2.03 48.51 15 4 H -0.29 -13.98 7.11 99.48 0.71 -13.27 15 5 H -0.28 -12.46 7.11 99.48 0.71 -11.76 15 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 15 7 C -0.25 -14.56 9.98 84.03 0.84 -13.72 15 8 H 0.08 4.39 7.82 -2.91 -0.02 4.37 15 9 N -0.70 -37.68 5.60 -323.60 -1.81 -39.49 15 10 C 0.12 5.16 6.62 44.86 0.30 5.46 15 11 H 0.10 4.23 8.12 -2.39 -0.02 4.21 15 12 C -0.18 -6.57 10.46 30.46 0.32 -6.25 15 13 C -0.19 -6.82 3.01 -52.37 -0.16 -6.97 15 14 C -0.11 -3.60 8.08 30.98 0.25 -3.35 15 15 C -0.12 -3.00 8.08 31.19 0.25 -2.75 15 16 C -0.09 -2.37 8.10 30.98 0.25 -2.12 15 17 H 0.25 15.28 8.31 -92.71 -0.77 14.51 15 18 H 0.37 21.50 8.02 -92.71 -0.74 20.76 15 19 H 0.07 2.78 8.14 -2.39 -0.02 2.76 15 20 H 0.11 3.29 8.14 -2.39 -0.02 3.27 15 21 H 0.06 2.38 8.14 -2.39 -0.02 2.36 15 22 H 0.05 1.77 8.14 -2.39 -0.02 1.75 15 23 H 0.09 2.01 8.14 -2.39 -0.02 1.99 15 24 H 0.08 1.73 8.14 -2.38 -0.02 1.71 15 25 H 0.08 1.85 8.14 -2.39 -0.02 1.83 15 26 H 0.08 2.16 8.14 -2.39 -0.02 2.14 15 Total: -1.00 -63.59 226.76 3.42 -60.16 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: 0.41 Total: 24.85 kcal Atomic # 6 Polarization: -36.14 SS G_CDS: 2.52 Total: -33.62 kcal Atomic # 7 Polarization: -98.37 SS G_CDS: -1.53 Total: -99.90 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -63.59 3.42 -60.16 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642846598.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.461 kcal (2) G-P(sol) polarization free energy of solvation -63.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds