Wall clock time and date at job start Mon Mar 30 2020 01:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 H 1.08992 * 115.53223 * 34.09833 * 9 7 2 11 11 C 1.52999 * 117.45972 * 179.56630 * 9 7 2 12 12 H 1.09003 * 119.29615 * 218.90262 * 11 9 7 13 13 C 1.53009 * 117.45866 * 248.60336 * 9 7 2 14 14 H 1.08999 * 119.29773 * 141.09376 * 13 9 7 15 15 C 1.54263 * 118.19476 * 346.01992 * 13 9 7 16 16 C 1.54887 * 104.19507 * 272.20527 * 15 13 9 17 17 C 1.54265 * 118.20182 * 13.97587 * 11 9 7 18 18 H 1.08994 * 110.48448 * 329.11297 * 17 11 9 19 19 N 1.46909 * 110.48637 * 206.60353 * 17 11 9 20 20 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 21 21 H 1.09000 * 110.49081 * 30.88753 * 15 13 9 22 22 H 1.09005 * 110.48586 * 153.53382 * 15 13 9 23 23 H 1.09000 * 110.76081 * 279.63102 * 16 15 13 24 24 H 1.09005 * 110.91599 * 156.33345 * 16 15 13 25 25 H 1.00904 * 110.99569 * 180.02562 * 19 17 11 26 26 H 1.00901 * 110.99706 * 303.94747 * 19 17 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.3111 -2.4989 -0.5512 11 6 2.0741 -3.7889 -0.0091 12 1 1.7337 -4.6343 -0.6070 13 6 1.3268 -3.3575 1.2649 14 1 0.4359 -3.8851 1.6056 15 6 2.4051 -3.0163 2.3140 16 6 3.6497 -3.8147 1.8530 17 6 3.5804 -3.6949 0.3103 18 1 3.9804 -2.7350 -0.0162 19 7 4.3110 -4.7986 -0.3272 20 1 -0.4850 -0.8401 -0.0004 21 1 2.6153 -1.9468 2.3111 22 1 2.0892 -3.3413 3.3054 23 1 3.5768 -4.8570 2.1632 24 1 4.5653 -3.3628 2.2347 25 1 5.2976 -4.7448 -0.1228 26 1 3.9325 -5.6914 -0.0485 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000669379037.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:40 Heat of formation + Delta-G solvation = -9.190614 kcal Electronic energy + Delta-G solvation = -9655.598929 eV Core-core repulsion = 7926.237715 eV Total energy + Delta-G solvation = -1729.361214 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.48756 -35.34955 -33.84504 -31.38280 -27.06745 -26.65796 -23.12436 -21.37381 -20.39046 -18.25354 -17.24554 -16.65700 -15.62307 -15.04886 -14.90058 -14.27282 -13.75678 -13.28869 -12.86152 -12.63205 -12.31218 -11.98582 -11.93570 -11.72053 -11.07492 -10.74089 -10.27188 -10.03619 -9.51525 -8.62119 -6.25841 1.54117 1.61567 1.80690 2.58106 2.92533 3.36600 3.64017 3.87391 4.12947 4.32310 4.51533 4.56781 4.66722 4.69600 4.86114 4.94244 5.01557 5.23421 5.29570 5.51734 5.62132 6.16175 6.21958 6.31043 6.63330 6.71869 7.49853 8.77895 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.058739 B = 0.016360 C = 0.015355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.568219 B = 1711.075219 C = 1823.087717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.032 4.032 3 Si 1.113 2.887 4 H -0.286 1.286 5 H -0.271 1.271 6 H -0.268 1.268 7 C -0.563 4.563 8 H 0.056 0.944 9 C -0.011 4.011 10 H 0.037 0.963 11 C -0.165 4.165 12 H 0.093 0.907 13 C -0.197 4.197 14 H 0.085 0.915 15 C -0.080 4.080 16 C -0.138 4.138 17 C 0.125 3.875 18 H 0.067 0.933 19 N -0.843 5.843 20 H 0.256 0.744 21 H 0.051 0.949 22 H 0.066 0.934 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.349 0.651 26 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.849 -6.240 3.549 10.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.230 4.230 3 Si 0.934 3.066 4 H -0.211 1.211 5 H -0.196 1.196 6 H -0.193 1.193 7 C -0.600 4.600 8 H 0.074 0.926 9 C -0.030 4.030 10 H 0.056 0.944 11 C -0.184 4.184 12 H 0.111 0.889 13 C -0.216 4.216 14 H 0.103 0.897 15 C -0.118 4.118 16 C -0.177 4.177 17 C 0.013 3.987 18 H 0.085 0.915 19 N -0.372 5.372 20 H 0.066 0.934 21 H 0.070 0.930 22 H 0.085 0.915 23 H 0.095 0.905 24 H 0.091 0.909 25 H 0.162 0.838 26 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.421 -4.310 2.845 9.042 hybrid contribution -0.233 -2.064 0.827 2.235 sum 7.189 -6.374 3.673 10.286 Atomic orbital electron populations 1.70903 1.08012 1.29927 1.48626 1.27295 0.96575 1.06398 0.92739 0.82990 0.74182 0.71404 0.77980 1.21116 1.19623 1.19308 1.21697 0.93984 0.91216 1.53117 0.92577 1.20029 0.95785 0.91273 0.95940 0.94447 1.23134 0.93594 0.99768 1.01917 0.88905 1.23531 0.99773 1.07683 0.90600 0.89716 1.21637 0.93877 0.99823 0.96499 1.23292 0.97796 1.00253 0.96379 1.21631 0.91489 0.94365 0.91188 0.91489 1.58714 1.07573 1.05300 1.65639 0.93422 0.92986 0.91530 0.90475 0.90878 0.83752 0.84250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.11 13.65 21.45 0.29 -57.82 15 2 C -0.03 -1.85 5.46 84.65 0.46 -1.39 15 3 Si 1.11 50.15 29.90 68.60 2.05 52.21 15 4 H -0.29 -12.96 7.11 99.48 0.71 -12.25 15 5 H -0.27 -11.41 7.11 99.48 0.71 -10.71 15 6 H -0.27 -11.13 7.11 99.48 0.71 -10.43 15 7 C -0.56 -31.57 7.30 25.60 0.19 -31.39 15 8 H 0.06 3.08 5.88 -2.91 -0.02 3.07 15 9 C -0.01 -0.60 5.24 -11.54 -0.06 -0.66 15 10 H 0.04 2.14 7.05 -2.39 -0.02 2.12 15 11 C -0.17 -7.16 6.53 -10.07 -0.07 -7.23 15 12 H 0.09 3.84 8.14 -2.39 -0.02 3.82 15 13 C -0.20 -8.78 6.91 -10.07 -0.07 -8.85 15 14 H 0.08 3.60 8.14 -2.39 -0.02 3.58 15 15 C -0.08 -3.17 6.36 31.67 0.20 -2.97 15 16 C -0.14 -4.46 6.56 31.88 0.21 -4.25 15 17 C 0.12 4.65 3.52 45.99 0.16 4.82 15 18 H 0.07 2.91 6.02 -2.39 -0.01 2.90 15 19 N -0.84 -25.05 9.35 -164.22 -1.54 -26.58 15 20 H 0.26 16.11 6.79 -92.71 -0.63 15.48 15 21 H 0.05 2.35 7.00 -2.39 -0.02 2.33 15 22 H 0.07 2.29 8.14 -2.38 -0.02 2.27 15 23 H 0.08 2.14 8.13 -2.39 -0.02 2.12 15 24 H 0.07 2.12 8.14 -2.38 -0.02 2.11 15 25 H 0.35 8.49 9.08 -89.69 -0.81 7.67 15 26 H 0.34 8.90 8.98 -89.69 -0.81 8.09 15 Total: -1.00 -63.47 213.63 1.54 -61.92 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: -0.29 Total: 22.18 kcal Atomic # 6 Polarization: -52.94 SS G_CDS: 1.03 Total: -51.91 kcal Atomic # 7 Polarization: -83.16 SS G_CDS: -1.24 Total: -84.40 kcal Atomic # 14 Polarization: 50.15 SS G_CDS: 2.05 Total: 52.21 kcal Total: -63.47 1.54 -61.92 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000669379037.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.732 kcal (2) G-P(sol) polarization free energy of solvation -63.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds