Wall clock time and date at job start Mon Mar 30 2020 01:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 119.99637 * 2 1 4 4 H 1.48505 * 109.46773 * 274.56276 * 3 2 1 5 5 H 1.48496 * 109.47470 * 34.56304 * 3 2 1 6 6 H 1.48506 * 109.47250 * 154.56781 * 3 2 1 7 7 C 1.37870 * 120.00538 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00478 * 185.57714 * 7 2 1 9 9 C 1.50703 * 119.99775 * 5.57998 * 7 2 1 10 10 C 1.55848 * 115.58203 * 184.75642 * 9 7 2 11 11 C 1.54836 * 103.52110 * 158.88441 * 10 9 7 12 12 C 1.55846 * 103.51687 * 0.02562 * 11 10 9 13 13 C 1.55851 * 105.03622 * 72.48415 * 12 11 10 14 14 C 1.55842 * 115.58279 * 61.52523 * 9 7 2 15 15 N 1.50649 * 101.03010 * 327.00640 * 12 11 10 16 16 H 0.96999 * 120.00309 * 0.02562 * 1 2 3 17 17 H 1.08998 * 110.61048 * 40.37788 * 10 9 7 18 18 H 1.08999 * 110.61139 * 277.39500 * 10 9 7 19 19 H 1.09001 * 110.61096 * 241.49193 * 11 10 9 20 20 H 1.08999 * 110.74740 * 118.56708 * 11 10 9 21 21 H 1.08997 * 115.58137 * 201.10673 * 12 11 10 22 22 H 1.09001 * 110.61220 * 46.02001 * 13 12 11 23 23 H 1.08992 * 110.61916 * 169.00610 * 13 12 11 24 24 H 1.08996 * 110.61616 * 318.86779 * 14 9 7 25 25 H 1.08999 * 110.61526 * 81.69379 * 14 9 7 26 26 H 1.00896 * 111.00213 * 170.95469 * 15 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4000 2.1022 -1.3957 5 1 1.4980 2.6230 0.7942 6 1 3.5916 1.4144 0.6013 7 6 2.0045 -1.1939 0.0005 8 1 3.0807 -1.1961 0.0914 9 6 1.2565 -2.4961 -0.1258 10 6 2.1229 -3.7851 0.0022 11 6 1.0931 -4.8773 0.3819 12 6 -0.2580 -4.1023 0.4320 13 6 -0.6066 -3.8008 -1.0568 14 6 0.4474 -2.6821 -1.4447 15 7 0.2017 -2.7526 0.9183 16 1 -0.4850 0.8400 -0.0004 17 1 2.8680 -3.6700 0.7894 18 1 2.6009 -4.0222 -0.9483 19 1 1.3279 -5.3035 1.3573 20 1 1.0596 -5.6574 -0.3785 21 1 -1.0496 -4.5736 1.0144 22 1 -0.4648 -4.6896 -1.6717 23 1 -1.6282 -3.4313 -1.1446 24 1 -0.0565 -1.7556 -1.7198 25 1 1.0999 -3.0167 -2.2512 26 1 -0.5451 -2.0761 0.8668 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000669379942.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:09 Heat of formation + Delta-G solvation = 7.354080 kcal Electronic energy + Delta-G solvation = -9962.776868 eV Core-core repulsion = 8234.133086 eV Total energy + Delta-G solvation = -1728.643782 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -38.80638 -32.62511 -29.32694 -28.52155 -27.91685 -24.52052 -21.12944 -19.31229 -18.17232 -16.58317 -14.90097 -14.33066 -14.01633 -13.46586 -12.04489 -11.77013 -11.51735 -11.14890 -10.98301 -10.73357 -10.54960 -10.36283 -10.17335 -9.88165 -9.61110 -9.07288 -8.71460 -8.52548 -7.18330 -6.08597 -4.11723 3.29169 3.36470 3.40324 4.39633 5.10685 5.55831 5.69641 5.83150 6.09759 6.23604 6.32467 6.36484 6.54335 6.58630 6.73644 6.80391 6.90185 7.12621 7.20542 7.26494 7.65842 7.90005 8.14544 8.39703 8.92579 9.07995 9.55211 11.00475 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.079532 B = 0.017827 C = 0.016579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 351.975113 B = 1570.240712 C = 1688.453193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.071 3.929 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.490 4.490 8 H 0.063 0.937 9 C 0.226 3.774 10 C -0.115 4.115 11 C -0.110 4.110 12 C 0.030 3.970 13 C -0.152 4.152 14 C -0.143 4.143 15 N -0.650 5.650 16 H 0.262 0.738 17 H 0.054 0.946 18 H 0.045 0.955 19 H 0.053 0.947 20 H 0.047 0.953 21 H 0.086 0.914 22 H 0.046 0.954 23 H 0.049 0.951 24 H 0.074 0.926 25 H 0.038 0.962 26 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.038 -4.674 -1.263 4.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.132 4.132 3 Si 0.726 3.274 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.528 4.528 8 H 0.082 0.918 9 C 0.137 3.863 10 C -0.153 4.153 11 C -0.148 4.148 12 C -0.081 4.081 13 C -0.191 4.191 14 C -0.183 4.183 15 N -0.281 5.281 16 H 0.072 0.928 17 H 0.073 0.927 18 H 0.064 0.936 19 H 0.071 0.929 20 H 0.066 0.934 21 H 0.104 0.896 22 H 0.064 0.936 23 H 0.068 0.932 24 H 0.092 0.908 25 H 0.057 0.943 26 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.239 -4.712 -0.597 4.756 hybrid contribution -0.254 0.994 -0.986 1.423 sum -0.015 -3.718 -1.583 4.041 Atomic orbital electron populations 1.69766 1.06002 1.26832 1.49921 1.24992 0.94900 0.99235 0.94097 0.86479 0.79971 0.83052 0.77875 1.20758 1.21197 1.19753 1.20622 0.93077 0.88862 1.50287 0.91831 1.20835 0.88644 0.91298 0.85565 1.22625 0.97310 0.96393 0.98962 1.22524 0.96115 0.96810 0.99369 1.24107 0.95505 0.95337 0.93179 1.23907 0.98940 0.98617 0.97664 1.23924 0.96980 0.97076 1.00290 1.66041 1.14211 1.01336 1.46468 0.92765 0.92715 0.93600 0.92868 0.93418 0.89603 0.93565 0.93247 0.90780 0.94275 0.83624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.62 10.61 55.43 0.59 -24.03 15 2 C 0.07 1.93 5.31 -17.82 -0.09 1.84 15 3 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 15 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 15 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 15 7 C -0.49 -13.58 8.98 -34.44 -0.31 -13.89 15 8 H 0.06 1.75 7.82 -52.48 -0.41 1.34 15 9 C 0.23 5.74 1.13 -127.62 -0.14 5.59 15 10 C -0.11 -2.55 6.07 -24.24 -0.15 -2.70 15 11 C -0.11 -2.17 6.43 -24.24 -0.16 -2.32 15 12 C 0.03 0.62 5.54 -62.56 -0.35 0.28 15 13 C -0.15 -3.15 6.54 -22.16 -0.15 -3.30 15 14 C -0.14 -3.41 6.00 -22.16 -0.13 -3.55 15 15 N -0.65 -16.26 7.50 -83.04 -0.62 -16.88 15 16 H 0.26 6.97 8.31 -40.82 -0.34 6.63 15 17 H 0.05 1.23 8.14 -51.93 -0.42 0.80 15 18 H 0.05 0.96 7.80 -51.93 -0.41 0.55 15 19 H 0.05 0.99 8.14 -51.93 -0.42 0.56 15 20 H 0.05 0.84 7.79 -51.93 -0.40 0.43 15 21 H 0.09 1.62 8.14 -51.93 -0.42 1.19 15 22 H 0.05 0.86 7.79 -51.93 -0.40 0.45 15 23 H 0.05 1.00 8.14 -51.93 -0.42 0.58 15 24 H 0.07 1.95 6.99 -51.93 -0.36 1.58 15 25 H 0.04 0.88 7.81 -51.93 -0.41 0.48 15 26 H 0.35 9.18 7.07 -39.29 -0.28 8.91 15 LS Contribution 208.93 15.07 3.15 3.15 Total: -1.00 -27.75 208.93 -6.88 -34.63 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -3.50 Total: 5.07 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: -1.48 Total: -18.06 kcal Atomic # 7 Polarization: -40.88 SS G_CDS: -0.03 Total: -40.92 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 3.15 Total: 3.15 kcal Total: -27.75 -6.88 -34.63 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000669379942.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.985 kcal (2) G-P(sol) polarization free energy of solvation -27.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds