Wall clock time and date at job start Mon Mar 30 2020 01:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 119.99935 * 2 1 4 4 H 1.48504 * 109.47157 * 239.99743 * 3 2 1 5 5 H 1.48502 * 109.47177 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47179 * 119.99769 * 3 2 1 7 7 C 1.38813 * 120.00466 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00576 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99707 * 0.02562 * 7 2 1 10 10 C 1.47602 * 134.51697 * 359.97438 * 9 7 2 11 11 C 1.54174 * 86.27218 * 154.70943 * 10 9 7 12 12 H 1.08999 * 116.53512 * 143.01040 * 11 10 9 13 13 C 1.54067 * 112.37748 * 279.44517 * 11 10 9 14 14 C 1.53532 * 106.24702 * 118.88013 * 13 11 10 15 15 C 1.53468 * 107.21982 * 342.34938 * 14 13 11 16 16 C 1.47398 * 134.61006 * 179.91558 * 9 7 2 17 17 H 1.08999 * 115.88084 * 88.16598 * 16 9 7 18 18 H 0.97001 * 120.00466 * 0.02562 * 1 2 3 19 19 H 1.09002 * 113.76549 * 40.34394 * 10 9 7 20 20 H 1.08996 * 113.76636 * 269.07343 * 10 9 7 21 21 H 1.09003 * 110.10074 * 238.07527 * 13 11 10 22 22 H 1.08998 * 110.09545 * 359.61902 * 13 11 10 23 23 H 1.08995 * 109.89064 * 101.75282 * 14 13 11 24 24 H 1.08994 * 109.88806 * 222.78707 * 14 13 11 25 25 H 1.09005 * 109.84128 * 120.54879 * 15 14 13 26 26 H 1.08999 * 109.84494 * 241.55683 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1033 -2.7581 0.0005 11 6 0.3425 -4.0796 -0.6567 12 1 -0.1948 -4.9788 -0.3554 13 6 0.5840 -3.9293 -2.1709 14 6 2.0618 -4.2726 -2.4063 15 6 2.7715 -4.1802 -1.0488 16 6 1.7168 -3.8092 -0.0005 17 1 1.8743 -4.2601 0.9793 18 1 -0.4851 0.8400 -0.0004 19 1 -0.7191 -2.1322 -0.6453 20 1 -0.5244 -2.8839 0.9979 21 1 -0.0535 -4.6205 -2.7223 22 1 0.3822 -2.9045 -2.4825 23 1 2.1490 -5.2843 -2.8023 24 1 2.5007 -3.5615 -3.1061 25 1 3.2188 -5.1423 -0.7989 26 1 3.5427 -3.4108 -1.0860 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685966837.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:45 Heat of formation + Delta-G solvation = 26.076202 kcal Electronic energy + Delta-G solvation = -9829.565989 eV Core-core repulsion = 8101.734059 eV Total energy + Delta-G solvation = -1727.831930 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.81822 -35.09530 -33.23708 -30.41961 -28.64031 -25.38429 -24.34141 -21.19157 -19.85701 -18.41510 -17.19257 -16.43312 -15.75062 -15.27509 -14.50636 -14.16413 -13.32236 -13.20197 -12.85311 -12.51950 -12.31752 -12.02820 -11.76780 -11.57002 -11.37781 -11.03570 -10.93808 -10.75720 -8.85874 -7.86751 -5.18178 1.42583 1.46319 1.52368 2.48337 3.31626 3.37263 3.67185 4.02995 4.29374 4.43433 4.64681 4.71569 4.87979 4.91241 5.04162 5.10680 5.25639 5.28262 5.31650 5.37413 5.59482 5.68489 5.85322 6.02836 6.96691 7.66299 8.65732 9.30553 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.067730 B = 0.017202 C = 0.015762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.309852 B = 1627.296656 C = 1775.991853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.072 4.072 3 Si 0.975 3.025 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.279 1.279 7 C -0.223 4.223 8 H 0.078 0.922 9 N -0.628 5.628 10 C 0.156 3.844 11 C -0.123 4.123 12 H 0.108 0.892 13 C -0.091 4.091 14 C -0.104 4.104 15 C -0.119 4.119 16 C 0.124 3.876 17 H 0.061 0.939 18 H 0.246 0.754 19 H 0.039 0.961 20 H 0.011 0.989 21 H 0.081 0.919 22 H 0.029 0.971 23 H 0.088 0.912 24 H 0.045 0.955 25 H 0.087 0.913 26 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.737 -8.845 -3.145 9.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.265 4.265 3 Si 0.804 3.196 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.205 1.205 7 C -0.352 4.352 8 H 0.096 0.904 9 N -0.355 5.355 10 C 0.030 3.970 11 C -0.142 4.142 12 H 0.126 0.874 13 C -0.129 4.129 14 C -0.142 4.142 15 C -0.158 4.158 16 C 0.019 3.981 17 H 0.078 0.922 18 H 0.055 0.945 19 H 0.057 0.943 20 H 0.029 0.971 21 H 0.100 0.900 22 H 0.048 0.952 23 H 0.106 0.894 24 H 0.064 0.936 25 H 0.106 0.894 26 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.792 -8.512 -3.156 9.498 hybrid contribution 0.221 1.439 0.376 1.503 sum 3.013 -7.074 -2.780 8.176 Atomic orbital electron populations 1.70017 1.06403 1.25364 1.58880 1.25576 0.96525 1.00691 1.03678 0.85197 0.77166 0.79112 0.78165 1.20335 1.22012 1.20484 1.19286 0.90604 0.83579 1.41722 0.90445 1.46205 1.03232 1.00149 1.85863 1.22268 0.87031 0.91928 0.95728 1.23925 0.97049 0.97368 0.95854 0.87362 1.21685 0.97055 0.99911 0.94217 1.21798 0.94472 1.01396 0.96496 1.21990 0.97851 1.00704 0.95224 1.22982 0.94841 0.83977 0.96344 0.92189 0.94490 0.94273 0.97090 0.90019 0.95208 0.89376 0.93648 0.89426 0.94133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.13 11.37 21.65 0.25 -59.88 15 2 C -0.07 -4.30 5.50 84.86 0.47 -3.83 15 3 Si 0.98 47.49 29.55 68.60 2.03 49.51 15 4 H -0.28 -12.98 7.11 99.48 0.71 -12.28 15 5 H -0.29 -14.35 7.11 99.48 0.71 -13.64 15 6 H -0.28 -13.08 7.11 99.48 0.71 -12.37 15 7 C -0.22 -13.04 10.64 84.03 0.89 -12.14 15 8 H 0.08 4.35 7.83 -2.91 -0.02 4.33 15 9 N -0.63 -33.47 3.27 -686.12 -2.24 -35.71 15 10 C 0.16 7.81 6.91 86.54 0.60 8.41 15 11 C -0.12 -4.68 5.22 -9.45 -0.05 -4.73 15 12 H 0.11 3.33 8.14 -2.39 -0.02 3.31 15 13 C -0.09 -3.26 6.24 31.13 0.19 -3.06 15 14 C -0.10 -3.33 6.78 30.93 0.21 -3.12 15 15 C -0.12 -4.14 6.54 30.84 0.20 -3.93 15 16 C 0.12 5.12 5.30 45.45 0.24 5.36 15 17 H 0.06 2.37 8.14 -2.39 -0.02 2.35 15 18 H 0.25 15.05 8.31 -92.71 -0.77 14.28 15 19 H 0.04 2.20 6.97 -2.39 -0.02 2.18 15 20 H 0.01 0.58 8.14 -2.39 -0.02 0.56 15 21 H 0.08 2.34 8.14 -2.39 -0.02 2.32 15 22 H 0.03 1.30 7.69 -2.39 -0.02 1.28 15 23 H 0.09 2.15 8.14 -2.39 -0.02 2.13 15 24 H 0.04 1.53 8.14 -2.39 -0.02 1.51 15 25 H 0.09 2.40 8.14 -2.38 -0.02 2.38 15 26 H 0.04 1.57 8.14 -2.39 -0.02 1.56 15 Total: -1.00 -67.14 214.56 3.92 -63.22 By element: Atomic # 1 Polarization: -1.24 SS G_CDS: 1.14 Total: -0.10 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: 2.76 Total: -17.04 kcal Atomic # 7 Polarization: -93.60 SS G_CDS: -2.00 Total: -95.59 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.51 kcal Total: -67.14 3.92 -63.22 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685966837.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.297 kcal (2) G-P(sol) polarization free energy of solvation -67.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds