Wall clock time and date at job start Mon Mar 30 2020 01:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 119.99820 * 2 1 4 4 H 1.48503 * 109.47042 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47048 * 299.99375 * 3 2 1 6 6 H 1.48504 * 109.47349 * 59.99671 * 3 2 1 7 7 C 1.38813 * 119.99751 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99489 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00183 * 0.02562 * 7 2 1 10 10 C 1.47046 * 136.01687 * 359.97438 * 9 7 2 11 11 C 1.53576 * 88.11527 * 207.17821 * 10 9 7 12 12 H 1.09005 * 116.66929 * 216.64171 * 11 10 9 13 13 C 1.53720 * 113.27364 * 78.86260 * 11 10 9 14 14 C 1.53517 * 107.27471 * 253.56466 * 13 11 10 15 15 C 1.53636 * 107.18506 * 359.63745 * 14 13 11 16 16 C 1.46852 * 136.01348 * 179.62676 * 9 7 2 17 17 H 1.08999 * 115.49638 * 270.89828 * 16 9 7 18 18 H 0.97003 * 119.99945 * 0.02562 * 1 2 3 19 19 H 1.09002 * 113.44344 * 321.98817 * 10 9 7 20 20 H 1.08996 * 113.44402 * 92.36104 * 10 9 7 21 21 H 1.09003 * 109.87666 * 12.98050 * 13 11 10 22 22 H 1.09003 * 109.87904 * 133.98792 * 13 11 10 23 23 H 1.08998 * 109.89977 * 119.02675 * 14 13 11 24 24 H 1.09002 * 109.89415 * 240.24712 * 14 13 11 25 25 H 1.08997 * 110.13485 * 137.09937 * 15 14 13 26 26 H 1.09007 * 110.13147 * 258.73044 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3963 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.0879 -2.7937 0.0005 11 6 0.3374 -4.0923 0.7016 12 1 -0.1983 -4.9987 0.4196 13 6 0.5909 -3.9146 2.2074 14 6 2.1100 -3.9643 2.4229 15 6 2.7570 -4.1806 1.0463 16 6 1.6804 -3.8130 -0.0056 17 1 1.8036 -4.2616 -0.9914 18 1 -0.4850 0.8401 -0.0004 19 1 -0.7221 -2.1560 0.6164 20 1 -0.4933 -2.9530 -0.9986 21 1 0.2009 -2.9519 2.5378 22 1 0.1088 -4.7198 2.7619 23 1 2.4550 -3.0232 2.8511 24 1 2.3637 -4.7914 3.0861 25 1 3.6294 -3.5366 0.9364 26 1 3.0449 -5.2252 0.9270 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685966840.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:51 Heat of formation + Delta-G solvation = 48.526880 kcal Electronic energy + Delta-G solvation = -9849.283292 eV Core-core repulsion = 8122.424896 eV Total energy + Delta-G solvation = -1726.858396 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.23095 -33.13715 -31.35253 -28.62710 -26.80325 -23.60793 -22.37483 -19.55097 -18.08559 -16.46240 -15.35287 -14.63343 -14.03052 -13.46331 -12.69914 -12.19059 -11.61198 -11.20180 -11.10129 -10.79712 -10.43158 -10.38807 -10.00214 -9.92213 -9.65417 -9.40189 -8.88622 -8.69899 -6.76922 -5.68101 -2.98702 3.42675 3.47691 3.50358 4.52030 5.13630 5.38361 5.43662 5.66572 5.83419 5.97601 6.22072 6.28176 6.39080 6.49543 6.60767 6.74423 6.76320 6.92072 6.96027 7.15957 7.36724 7.55861 7.67612 8.08675 9.13515 9.80179 10.77488 11.49927 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.066839 B = 0.017495 C = 0.016058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.819125 B = 1600.068960 C = 1743.291125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.206 4.206 8 H 0.079 0.921 9 N -0.599 5.599 10 C 0.160 3.840 11 C -0.154 4.154 12 H 0.072 0.928 13 C -0.087 4.087 14 C -0.105 4.105 15 C -0.123 4.123 16 C 0.133 3.867 17 H 0.053 0.947 18 H 0.251 0.749 19 H 0.070 0.930 20 H 0.021 0.979 21 H 0.067 0.933 22 H 0.044 0.956 23 H 0.059 0.941 24 H 0.045 0.955 25 H 0.057 0.943 26 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.867 -7.087 2.637 7.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.208 4.208 3 Si 0.740 3.260 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.334 4.334 8 H 0.096 0.904 9 N -0.324 5.324 10 C 0.034 3.966 11 C -0.173 4.173 12 H 0.090 0.910 13 C -0.124 4.124 14 C -0.143 4.143 15 C -0.162 4.162 16 C 0.026 3.974 17 H 0.071 0.929 18 H 0.061 0.939 19 H 0.089 0.911 20 H 0.038 0.962 21 H 0.085 0.915 22 H 0.063 0.937 23 H 0.078 0.922 24 H 0.064 0.936 25 H 0.076 0.924 26 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.922 -6.704 2.649 7.460 hybrid contribution 0.466 0.975 -0.217 1.103 sum 2.388 -5.729 2.432 6.666 Atomic orbital electron populations 1.69848 1.04949 1.24939 1.57248 1.24753 0.95643 0.97318 1.03076 0.86082 0.78710 0.84034 0.77206 1.20552 1.21858 1.21828 1.18918 0.90068 0.81558 1.42854 0.90371 1.45444 1.02495 0.98799 1.85678 1.22096 0.88600 0.89837 0.96066 1.23731 0.99303 0.98848 0.95448 0.90986 1.21506 0.95590 1.00761 0.94557 1.21738 0.95714 1.00170 0.96638 1.22344 0.99207 0.98948 0.95666 1.22962 0.92702 0.86994 0.94765 0.92948 0.93883 0.91126 0.96161 0.91455 0.93679 0.92180 0.93594 0.92378 0.93191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.11 11.50 55.49 0.64 -27.47 15 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 15 3 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 15 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 15 6 H -0.29 -7.29 7.11 56.52 0.40 -6.89 15 7 C -0.21 -5.92 10.67 -15.06 -0.16 -6.09 15 8 H 0.08 2.18 7.83 -52.48 -0.41 1.77 15 9 N -0.60 -15.81 3.22 -175.12 -0.56 -16.37 15 10 C 0.16 3.93 6.85 -8.49 -0.06 3.88 15 11 C -0.15 -3.09 5.26 -89.25 -0.47 -3.56 15 12 H 0.07 1.25 8.14 -51.93 -0.42 0.83 15 13 C -0.09 -1.65 6.27 -26.09 -0.16 -1.81 15 14 C -0.10 -1.92 6.69 -26.13 -0.17 -2.10 15 15 C -0.12 -2.32 6.55 -25.37 -0.17 -2.48 15 16 C 0.13 2.87 5.30 -71.06 -0.38 2.49 15 17 H 0.05 1.10 8.14 -51.93 -0.42 0.67 15 18 H 0.25 7.40 8.31 -40.82 -0.34 7.06 15 19 H 0.07 1.91 6.94 -51.93 -0.36 1.55 15 20 H 0.02 0.51 8.14 -51.93 -0.42 0.09 15 21 H 0.07 1.45 7.73 -51.93 -0.40 1.05 15 22 H 0.04 0.73 8.14 -51.93 -0.42 0.30 15 23 H 0.06 1.19 8.14 -51.93 -0.42 0.77 15 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 15 25 H 0.06 1.15 8.14 -51.93 -0.42 0.73 15 26 H 0.05 0.80 8.14 -51.92 -0.42 0.38 15 LS Contribution 214.64 15.07 3.23 3.23 Total: -1.00 -30.66 214.64 -7.07 -37.73 By element: Atomic # 1 Polarization: -0.99 SS G_CDS: -3.69 Total: -4.68 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -1.67 Total: -10.11 kcal Atomic # 7 Polarization: -43.92 SS G_CDS: 0.07 Total: -43.84 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 3.23 Total: 3.23 kcal Total: -30.66 -7.07 -37.73 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685966840.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.260 kcal (2) G-P(sol) polarization free energy of solvation -30.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds