Wall clock time and date at job start Mon Mar 30 2020 01:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30685 * 1 3 3 Si 1.86797 * 120.00146 * 2 1 4 4 H 1.48503 * 109.46843 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.46888 * 120.00082 * 3 2 1 6 6 H 1.48494 * 109.47504 * 240.00128 * 3 2 1 7 7 C 1.40312 * 120.00055 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99997 * 179.97438 * 7 2 1 9 9 C 1.40075 * 120.00110 * 359.97438 * 7 2 1 10 10 C 1.35034 * 120.00169 * 188.38670 * 9 7 2 11 11 C 1.51414 * 121.00362 * 6.41129 * 10 9 7 12 12 C 1.53380 * 108.11850 * 130.88609 * 11 10 9 13 13 C 1.53017 * 109.13538 * 52.46174 * 12 11 10 14 14 N 1.46795 * 109.89444 * 297.14877 * 13 12 11 15 15 C 1.46669 * 111.25896 * 65.24076 * 14 13 12 16 16 H 0.97004 * 119.99854 * 179.97438 * 1 2 3 17 17 H 1.08004 * 119.99681 * 8.38087 * 9 7 2 18 18 H 1.09004 * 109.73394 * 250.53749 * 11 10 9 19 19 H 1.09000 * 109.73684 * 11.18240 * 11 10 9 20 20 H 1.09003 * 109.52805 * 172.36112 * 12 11 10 21 21 H 1.09002 * 109.52423 * 292.56075 * 12 11 10 22 22 H 1.09000 * 109.39763 * 57.27528 * 13 12 11 23 23 H 1.08997 * 109.40177 * 177.10199 * 13 12 11 24 24 H 1.00900 * 111.00143 * 301.30227 * 14 13 12 25 25 H 1.09004 * 109.56970 * 184.24812 * 15 14 13 26 26 H 1.09001 * 109.45606 * 63.81680 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 1.2758 2.7464 0.0006 5 1 3.0946 1.6963 1.2125 6 1 3.0946 1.6964 -1.2124 7 6 2.0084 -1.2151 -0.0005 8 1 3.0884 -1.2151 -0.0010 9 6 1.3081 -2.4282 -0.0005 10 6 1.9725 -3.5914 0.1695 11 6 3.4490 -3.6045 0.5049 12 6 3.6587 -4.5448 1.6983 13 6 3.0188 -5.8996 1.3879 14 7 1.5699 -5.7397 1.2143 15 6 1.2626 -4.9211 0.0367 16 1 -0.4850 -0.8401 -0.0004 17 1 0.2366 -2.4332 -0.1365 18 1 4.0179 -3.9650 -0.3522 19 1 3.7759 -2.5981 0.7665 20 1 4.7262 -4.6778 1.8741 21 1 3.1929 -4.1165 2.5858 22 1 3.4508 -6.3028 0.4720 23 1 3.2097 -6.5875 2.2116 24 1 1.1474 -5.3492 2.0432 25 1 0.1866 -4.7573 -0.0233 26 1 1.6085 -5.4328 -0.8614 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687677265.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:22 Heat of formation + Delta-G solvation = -34.469079 kcal Electronic energy + Delta-G solvation = -9434.551918 eV Core-core repulsion = 7704.094547 eV Total energy + Delta-G solvation = -1730.457371 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.26921 -36.36389 -33.15306 -32.23010 -28.49522 -25.57089 -24.29534 -22.40699 -20.37134 -18.01741 -16.84773 -16.47737 -15.81116 -15.39113 -14.76643 -14.41458 -13.82876 -13.22765 -12.98880 -12.91794 -12.49378 -12.08289 -11.90542 -11.83611 -11.31872 -11.23107 -11.10570 -9.71918 -9.29056 -9.05250 -6.38001 1.30405 1.47949 1.76777 1.93322 2.32939 3.23814 3.62749 4.15247 4.24522 4.32702 4.59000 4.63955 4.82495 4.92086 4.93849 5.00238 5.12009 5.38842 5.46444 5.65903 5.73567 6.10045 6.16058 6.40429 6.61498 6.91650 7.11733 8.10396 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.080254 B = 0.012946 C = 0.011636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 348.807802 B = 2162.309791 C = 2405.763152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C -0.014 4.014 3 Si 1.124 2.876 4 H -0.271 1.271 5 H -0.262 1.262 6 H -0.261 1.261 7 C -0.545 4.545 8 H 0.069 0.931 9 C 0.007 3.993 10 C -0.416 4.416 11 C -0.038 4.038 12 C -0.142 4.142 13 C 0.065 3.935 14 N -0.686 5.686 15 C 0.137 3.863 16 H 0.273 0.727 17 H 0.048 0.952 18 H 0.030 0.970 19 H 0.038 0.962 20 H 0.072 0.928 21 H 0.045 0.955 22 H 0.063 0.937 23 H 0.088 0.912 24 H 0.335 0.665 25 H 0.046 0.954 26 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.276 -3.720 2.349 6.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.225 4.225 3 Si 0.941 3.059 4 H -0.196 1.196 5 H -0.186 1.186 6 H -0.185 1.185 7 C -0.575 4.575 8 H 0.087 0.913 9 C -0.014 4.014 10 C -0.421 4.421 11 C -0.075 4.075 12 C -0.181 4.181 13 C -0.064 4.064 14 N -0.313 5.313 15 C 0.008 3.992 16 H 0.085 0.915 17 H 0.066 0.934 18 H 0.048 0.952 19 H 0.057 0.943 20 H 0.091 0.909 21 H 0.064 0.936 22 H 0.082 0.918 23 H 0.107 0.893 24 H 0.151 0.849 25 H 0.064 0.936 26 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.928 -2.725 2.005 5.977 hybrid contribution 0.005 -0.757 0.117 0.766 sum 4.932 -3.482 2.123 6.400 Atomic orbital electron populations 1.70619 1.08749 1.32023 1.36547 1.28695 0.96078 1.08128 0.89605 0.82893 0.74486 0.69540 0.78968 1.19558 1.18646 1.18539 1.20726 0.96351 0.93177 1.47249 0.91328 1.19744 0.94633 0.93955 0.93081 1.22059 0.96848 0.93979 1.29246 1.20088 0.93774 0.97763 0.95905 1.22182 1.00854 0.97389 0.97645 1.21911 0.87492 0.95400 1.01634 1.60902 1.11507 1.52165 1.06739 1.20349 0.96837 0.89590 0.92447 0.91489 0.93441 0.95183 0.94315 0.90902 0.93616 0.91835 0.89329 0.84893 0.93557 0.93418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.00 13.59 21.89 0.30 -47.71 15 2 C -0.01 -0.73 5.50 85.37 0.47 -0.26 15 3 Si 1.12 44.96 29.94 68.60 2.05 47.02 15 4 H -0.27 -10.58 7.11 99.48 0.71 -9.88 15 5 H -0.26 -9.76 7.11 99.48 0.71 -9.05 15 6 H -0.26 -9.70 7.11 99.48 0.71 -8.99 15 7 C -0.55 -30.38 8.50 23.22 0.20 -30.18 15 8 H 0.07 3.77 5.92 -2.91 -0.02 3.76 15 9 C 0.01 0.38 8.96 21.98 0.20 0.58 15 10 C -0.42 -20.26 5.62 -16.76 -0.09 -20.35 15 11 C -0.04 -1.68 5.78 30.20 0.17 -1.50 15 12 C -0.14 -5.01 6.09 30.73 0.19 -4.83 15 13 C 0.07 2.11 6.44 86.33 0.56 2.67 15 14 N -0.69 -24.99 6.87 -517.64 -3.56 -28.54 15 15 C 0.14 5.78 6.65 85.80 0.57 6.35 15 16 H 0.27 15.64 6.56 -92.71 -0.61 15.04 15 17 H 0.05 2.69 6.21 -2.91 -0.02 2.67 15 18 H 0.03 1.28 8.14 -2.39 -0.02 1.26 15 19 H 0.04 1.84 5.83 -2.39 -0.01 1.82 15 20 H 0.07 2.19 8.14 -2.39 -0.02 2.17 15 21 H 0.05 1.68 8.14 -2.39 -0.02 1.66 15 22 H 0.06 2.04 8.13 -2.39 -0.02 2.02 15 23 H 0.09 2.35 8.14 -2.39 -0.02 2.33 15 24 H 0.33 11.98 8.84 -89.69 -0.79 11.19 15 25 H 0.05 1.97 7.95 -2.38 -0.02 1.95 15 26 H 0.05 1.98 8.14 -2.39 -0.02 1.96 15 Total: -1.00 -58.42 215.43 1.59 -56.83 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 0.53 Total: 19.92 kcal Atomic # 6 Polarization: -49.78 SS G_CDS: 2.26 Total: -47.52 kcal Atomic # 7 Polarization: -72.99 SS G_CDS: -3.26 Total: -76.25 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.05 Total: 47.02 kcal Total: -58.42 1.59 -56.83 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687677265.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.359 kcal (2) G-P(sol) polarization free energy of solvation -58.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds