Wall clock time and date at job start Mon Mar 30 2020 01:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48503 * 109.47163 * 240.27760 * 3 2 1 5 5 H 1.48505 * 109.47234 * 0.27769 * 3 2 1 6 6 H 1.48492 * 109.47124 * 120.27784 * 3 2 1 7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3 8 8 H 1.07999 * 119.99858 * 179.72450 * 7 2 1 9 9 N 1.36938 * 119.99817 * 359.71804 * 7 2 1 10 10 C 1.49239 * 126.72085 * 359.69014 * 9 7 2 11 11 C 1.50685 * 104.71772 * 188.33468 * 10 9 7 12 12 H 1.09003 * 112.12367 * 78.61763 * 11 10 9 13 13 C 1.49455 * 131.45578 * 237.00804 * 11 10 9 14 14 C 1.54733 * 80.34463 * 135.77394 * 13 11 10 15 15 C 1.49748 * 81.73024 * 313.49593 * 14 13 11 16 16 H 1.08997 * 114.09473 * 291.68337 * 15 14 13 17 17 C 1.49635 * 126.71631 * 180.02562 * 9 7 2 18 18 H 0.97000 * 120.00043 * 359.72461 * 1 2 3 19 19 H 1.09002 * 110.39611 * 307.25769 * 10 9 7 20 20 H 1.08999 * 110.39540 * 69.65821 * 10 9 7 21 21 H 1.08999 * 114.65187 * 248.19671 * 13 11 10 22 22 H 1.08999 * 114.64528 * 22.27465 * 13 11 10 23 23 H 1.09001 * 114.60397 * 200.16997 * 14 13 11 24 24 H 1.09001 * 114.07100 * 66.80908 * 14 13 11 25 25 H 1.09006 * 110.94396 * 325.70820 * 17 9 7 26 26 H 1.08994 * 110.94683 * 89.41157 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.0989 1.6993 -1.2159 5 1 1.2853 2.7465 0.0068 6 1 3.1090 1.6934 1.2090 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0104 9 7 1.3254 -2.3881 -0.0059 10 6 -0.1567 -2.5626 0.0065 11 6 -0.3663 -4.0406 0.2120 12 1 -0.2341 -4.3330 1.2537 13 6 -1.1004 -5.0582 -0.6000 14 6 0.1867 -5.8570 -0.2848 15 6 0.8285 -4.5680 -0.6960 16 1 0.7187 -4.3342 -1.7549 17 6 1.9168 -3.7626 -0.0112 18 1 -0.4850 0.8400 0.0040 19 1 -0.5990 -1.9970 0.8266 20 1 -0.5840 -2.2494 -0.9461 21 1 -2.0004 -5.4529 -0.1285 22 1 -1.2376 -4.7907 -1.6477 23 1 0.3777 -6.6935 -0.9570 24 1 0.3074 -6.1080 0.7690 25 1 2.8412 -3.7868 -0.5884 26 1 2.0843 -4.1186 1.0052 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711178046.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:18 Heat of formation + Delta-G solvation = 88.717573 kcal Electronic energy + Delta-G solvation = -9745.740885 eV Core-core repulsion = 8020.625288 eV Total energy + Delta-G solvation = -1725.115597 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.93030 -36.26140 -33.27952 -29.44373 -28.81559 -24.64044 -24.13884 -21.54975 -20.93678 -18.84939 -16.98975 -15.71516 -15.59580 -15.28712 -15.00629 -13.87317 -13.47771 -13.17941 -12.83819 -12.52980 -12.47684 -12.26104 -11.95143 -11.84764 -11.75358 -11.28500 -10.76625 -9.72750 -8.95064 -7.86283 -5.23157 1.42898 1.47689 1.54022 2.46538 2.91429 3.31676 3.44709 3.70691 3.93435 4.16612 4.60804 4.68934 4.74190 4.83929 4.88156 5.06983 5.11175 5.22014 5.32942 5.40014 5.54413 5.69312 5.73349 6.11707 7.01915 7.68257 8.41653 9.24597 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.108818 B = 0.014175 C = 0.012953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 257.249701 B = 1974.808829 C = 2161.083413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.073 4.073 3 Si 0.985 3.015 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.275 1.275 7 C -0.244 4.244 8 H 0.083 0.917 9 N -0.638 5.638 10 C 0.202 3.798 11 C -0.182 4.182 12 H 0.091 0.909 13 C -0.097 4.097 14 C -0.080 4.080 15 C -0.163 4.163 16 H 0.084 0.916 17 C 0.145 3.855 18 H 0.247 0.753 19 H 0.016 0.984 20 H -0.006 1.006 21 H 0.084 0.916 22 H 0.086 0.914 23 H 0.088 0.912 24 H 0.098 0.902 25 H 0.042 0.958 26 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.037 -9.908 -0.566 9.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.266 4.266 3 Si 0.812 3.188 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.201 1.201 7 C -0.373 4.373 8 H 0.101 0.899 9 N -0.365 5.365 10 C 0.078 3.922 11 C -0.202 4.202 12 H 0.109 0.891 13 C -0.135 4.135 14 C -0.118 4.118 15 C -0.182 4.182 16 H 0.102 0.898 17 C 0.021 3.979 18 H 0.056 0.944 19 H 0.034 0.966 20 H 0.012 0.988 21 H 0.102 0.898 22 H 0.104 0.896 23 H 0.106 0.894 24 H 0.117 0.883 25 H 0.060 0.940 26 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 0.038 -9.651 -0.561 9.668 hybrid contribution 0.324 1.502 0.032 1.537 sum 0.362 -8.149 -0.529 8.174 Atomic orbital electron populations 1.70205 1.06461 1.25375 1.58326 1.25752 0.96735 1.01277 1.02822 0.85057 0.77057 0.78320 0.78323 1.20183 1.21863 1.20092 1.19478 0.91011 0.83765 1.43013 0.89899 1.46290 1.01951 1.00969 1.87310 1.20052 0.83753 0.91562 0.96812 1.23748 1.02649 0.94842 0.98924 0.89133 1.22390 0.97496 0.94321 0.99295 1.22347 0.93434 0.93702 1.02319 1.23685 0.96517 0.99765 0.98266 0.89761 1.21124 0.95018 0.84682 0.97052 0.94425 0.96557 0.98816 0.89779 0.89588 0.89371 0.88341 0.93977 0.94961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.44 10.52 21.65 0.23 -60.21 15 2 C -0.07 -4.39 5.49 84.86 0.47 -3.92 15 3 Si 0.99 47.49 29.55 68.60 2.03 49.51 15 4 H -0.28 -12.76 7.11 99.48 0.71 -12.05 15 5 H -0.29 -14.09 7.11 99.48 0.71 -13.38 15 6 H -0.28 -12.69 7.11 99.48 0.71 -11.98 15 7 C -0.24 -14.51 10.37 84.03 0.87 -13.64 15 8 H 0.08 4.67 7.83 -2.91 -0.02 4.65 15 9 N -0.64 -35.27 3.50 -693.29 -2.43 -37.70 15 10 C 0.20 10.74 5.20 85.10 0.44 11.18 15 11 C -0.18 -7.08 4.26 -22.95 -0.10 -7.18 15 12 H 0.09 3.40 7.30 -2.39 -0.02 3.38 15 13 C -0.10 -2.79 8.06 21.20 0.17 -2.62 15 14 C -0.08 -2.06 7.96 17.68 0.14 -1.92 15 15 C -0.16 -5.85 4.54 -18.92 -0.09 -5.94 15 16 H 0.08 3.22 7.58 -2.39 -0.02 3.20 15 17 C 0.14 6.28 7.07 85.35 0.60 6.88 15 18 H 0.25 15.12 8.31 -92.71 -0.77 14.34 15 19 H 0.02 0.97 7.10 -2.39 -0.02 0.95 15 20 H -0.01 -0.37 7.97 -2.39 -0.02 -0.39 15 21 H 0.08 2.02 8.14 -2.39 -0.02 2.00 15 22 H 0.09 2.50 7.60 -2.39 -0.02 2.48 15 23 H 0.09 1.79 8.14 -2.39 -0.02 1.77 15 24 H 0.10 2.31 7.42 -2.39 -0.02 2.29 15 25 H 0.04 1.77 8.14 -2.38 -0.02 1.75 15 26 H 0.03 1.34 8.11 -2.39 -0.02 1.32 15 Total: -1.00 -68.70 211.47 3.48 -65.21 By element: Atomic # 1 Polarization: -0.80 SS G_CDS: 1.14 Total: 0.34 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: 2.51 Total: -17.16 kcal Atomic # 7 Polarization: -95.71 SS G_CDS: -2.20 Total: -97.91 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.51 kcal Total: -68.70 3.48 -65.21 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711178046.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.931 kcal (2) G-P(sol) polarization free energy of solvation -68.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds