Wall clock time and date at job start Mon Mar 30 2020 01:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 120.00388 * 2 1 4 4 H 1.48495 * 109.47502 * 95.01022 * 3 2 1 5 5 H 1.48502 * 109.47453 * 215.01085 * 3 2 1 6 6 H 1.48503 * 109.47122 * 335.01227 * 3 2 1 7 7 C 1.38814 * 119.99562 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99560 * 173.12347 * 7 2 1 9 9 N 1.36929 * 120.00171 * 353.11185 * 7 2 1 10 10 C 1.46744 * 125.32480 * 186.15656 * 9 7 2 11 11 C 1.53891 * 106.77525 * 198.05632 * 10 9 7 12 12 H 1.08996 * 115.06662 * 204.10950 * 11 10 9 13 13 C 1.53594 * 113.70660 * 66.82402 * 11 10 9 14 14 C 1.56232 * 86.41489 * 231.22535 * 13 11 10 15 15 C 1.53789 * 87.59520 * 24.80346 * 14 13 11 16 16 H 1.09002 * 116.04508 * 217.21757 * 15 14 13 17 17 C 1.46633 * 125.32715 * 5.85485 * 9 7 2 18 18 H 0.96999 * 119.99645 * 359.97438 * 1 2 3 19 19 H 1.08996 * 110.00308 * 317.38656 * 10 9 7 20 20 H 1.09001 * 109.99621 * 78.73114 * 10 9 7 21 21 H 1.08997 * 113.57951 * 345.65202 * 13 11 10 22 22 H 1.09001 * 113.57292 * 116.43968 * 13 11 10 23 23 H 1.09007 * 112.82608 * 270.17854 * 14 13 11 24 24 H 1.09002 * 114.09317 * 139.62252 * 14 13 11 25 25 H 1.08994 * 109.76584 * 298.43714 * 17 9 7 26 26 H 1.09001 * 109.76323 * 59.17050 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.6037 1.9852 1.3946 5 1 3.4909 1.4729 -0.8033 6 1 1.3988 2.6809 -0.5914 7 6 2.0102 -1.2022 -0.0005 8 1 3.0844 -1.2055 -0.1125 9 7 1.3329 -2.3838 0.1412 10 6 1.9537 -3.7057 0.2848 11 6 0.8674 -4.7447 -0.0450 12 1 1.0222 -5.7300 0.3945 13 6 0.4191 -4.7244 -1.5139 14 6 -1.0411 -4.6383 -0.9649 15 6 -0.4541 -4.0216 0.3158 16 1 -0.9321 -4.3144 1.2506 17 6 -0.1261 -2.5255 0.1794 18 1 -0.4849 0.8401 0.0004 19 1 2.7869 -3.8039 -0.4110 20 1 2.3035 -3.8440 1.3078 21 1 0.7385 -3.8338 -2.0550 22 1 0.6396 -5.6477 -2.0497 23 1 -1.4930 -5.6180 -0.8096 24 1 -1.6859 -3.9575 -1.5207 25 1 -0.5273 -1.9784 1.0324 26 1 -0.5583 -2.1384 -0.7434 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711178051.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:20 Heat of formation + Delta-G solvation = 24.711050 kcal Electronic energy + Delta-G solvation = -9810.739769 eV Core-core repulsion = 8082.848642 eV Total energy + Delta-G solvation = -1727.891128 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.90627 -35.89728 -33.00480 -29.72886 -28.56092 -25.38883 -24.37994 -21.80031 -19.49994 -18.90619 -17.08239 -16.46832 -15.60040 -14.90633 -14.67856 -14.09516 -13.57850 -13.31012 -12.77702 -12.63759 -12.53331 -12.27377 -11.96276 -11.81099 -11.25889 -10.92821 -10.80359 -10.63744 -8.88189 -7.87726 -5.22597 1.43493 1.47008 1.54901 2.48382 3.29636 3.55885 3.75126 3.87632 3.95977 4.10452 4.58397 4.75521 4.81289 4.90916 4.95091 4.97497 5.11394 5.17638 5.33678 5.46769 5.65781 5.73691 5.88323 6.20753 7.10048 7.79399 8.43147 9.23037 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.088325 B = 0.015515 C = 0.014318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 316.935061 B = 1804.279184 C = 1955.050577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.068 4.068 3 Si 0.982 3.018 4 H -0.284 1.284 5 H -0.268 1.268 6 H -0.293 1.293 7 C -0.248 4.248 8 H 0.082 0.918 9 N -0.625 5.625 10 C 0.133 3.867 11 C -0.113 4.113 12 H 0.133 0.867 13 C -0.124 4.124 14 C -0.114 4.114 15 C -0.143 4.143 16 H 0.091 0.909 17 C 0.203 3.797 18 H 0.247 0.753 19 H 0.035 0.965 20 H 0.018 0.982 21 H 0.047 0.953 22 H 0.092 0.908 23 H 0.110 0.890 24 H 0.051 0.949 25 H 0.000 1.000 26 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.232 -9.158 -0.928 9.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.261 4.261 3 Si 0.809 3.191 4 H -0.211 1.211 5 H -0.193 1.193 6 H -0.219 1.219 7 C -0.377 4.377 8 H 0.099 0.901 9 N -0.352 5.352 10 C 0.008 3.992 11 C -0.131 4.131 12 H 0.150 0.850 13 C -0.161 4.161 14 C -0.152 4.152 15 C -0.162 4.162 16 H 0.109 0.891 17 C 0.078 3.922 18 H 0.056 0.944 19 H 0.053 0.947 20 H 0.036 0.964 21 H 0.066 0.934 22 H 0.111 0.889 23 H 0.128 0.872 24 H 0.070 0.930 25 H 0.018 0.982 26 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges 0.205 -8.953 -0.952 9.006 hybrid contribution 0.298 1.387 0.114 1.423 sum 0.502 -7.566 -0.838 7.629 Atomic orbital electron populations 1.70238 1.06449 1.25347 1.57953 1.25741 0.96661 1.01255 1.02419 0.85052 0.77570 0.78716 0.77749 1.21057 1.19292 1.21931 1.19472 0.91662 0.84023 1.42557 0.90062 1.44564 1.02388 1.02480 1.85743 1.21304 0.95479 0.85138 0.97290 1.23501 0.93658 0.98565 0.97408 0.84959 1.23069 0.96435 1.01290 0.95315 1.23219 0.95815 1.00999 0.95124 1.23510 0.98509 0.95040 0.99164 0.89124 1.20475 0.83782 0.90769 0.97169 0.94379 0.94714 0.96445 0.93406 0.88907 0.87168 0.93025 0.98160 0.97307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.65 10.29 21.65 0.22 -59.42 15 2 C -0.07 -4.03 5.48 84.86 0.46 -3.56 15 3 Si 0.98 47.21 29.56 68.60 2.03 49.24 15 4 H -0.28 -13.35 7.11 99.48 0.71 -12.65 15 5 H -0.27 -12.17 7.11 99.48 0.71 -11.46 15 6 H -0.29 -14.06 7.11 99.48 0.71 -13.36 15 7 C -0.25 -14.64 10.24 84.04 0.86 -13.78 15 8 H 0.08 4.57 7.84 -2.91 -0.02 4.55 15 9 N -0.63 -34.17 3.24 -697.84 -2.26 -36.43 15 10 C 0.13 5.76 6.72 86.63 0.58 6.34 15 11 C -0.11 -3.85 4.94 -9.64 -0.05 -3.90 15 12 H 0.13 3.47 8.14 -2.39 -0.02 3.45 15 13 C -0.12 -4.09 7.45 31.92 0.24 -3.85 15 14 C -0.11 -3.61 7.63 31.98 0.24 -3.36 15 15 C -0.14 -5.51 5.12 -9.62 -0.05 -5.56 15 16 H 0.09 3.17 8.14 -2.39 -0.02 3.15 15 17 C 0.20 10.69 4.61 86.61 0.40 11.09 15 18 H 0.25 14.98 8.31 -92.71 -0.77 14.21 15 19 H 0.03 1.47 8.14 -2.39 -0.02 1.45 15 20 H 0.02 0.75 8.14 -2.39 -0.02 0.73 15 21 H 0.05 1.96 7.80 -2.39 -0.02 1.94 15 22 H 0.09 2.39 8.14 -2.39 -0.02 2.37 15 23 H 0.11 2.62 8.14 -2.38 -0.02 2.60 15 24 H 0.05 1.77 7.97 -2.39 -0.02 1.75 15 25 H 0.00 0.01 7.35 -2.39 -0.02 -0.01 15 26 H 0.01 0.52 7.07 -2.39 -0.02 0.50 15 Total: -1.00 -67.80 211.80 3.82 -63.98 By element: Atomic # 1 Polarization: -1.92 SS G_CDS: 1.14 Total: -0.79 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: 2.69 Total: -16.58 kcal Atomic # 7 Polarization: -93.81 SS G_CDS: -2.04 Total: -95.85 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -67.80 3.82 -63.98 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711178051.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.695 kcal (2) G-P(sol) polarization free energy of solvation -67.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds