Wall clock time and date at job start Mon Mar 30 2020 01:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86795 * 119.99786 * 2 1 4 4 H 1.48497 * 109.47495 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.47168 * 120.00430 * 3 2 1 6 6 H 1.48498 * 109.47179 * 240.00262 * 3 2 1 7 7 C 1.38805 * 120.00058 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00168 * 203.79961 * 7 2 1 9 9 N 1.36939 * 120.00365 * 23.80170 * 7 2 1 10 10 C 1.49637 * 126.71317 * 20.43401 * 9 7 2 11 11 C 1.51984 * 101.74980 * 152.37236 * 10 9 7 12 12 H 1.08998 * 113.22285 * 290.89380 * 11 10 9 13 13 C 1.49753 * 129.66244 * 132.02569 * 11 10 9 14 14 C 1.56699 * 81.07332 * 228.03248 * 13 11 10 15 15 C 1.49457 * 80.74852 * 45.99996 * 14 13 11 16 16 H 1.08996 * 113.34164 * 65.37309 * 15 14 13 17 17 C 1.49243 * 126.72282 * 200.75685 * 9 7 2 18 18 H 0.96999 * 119.99620 * 185.75705 * 1 2 3 19 19 H 1.08999 * 110.94665 * 270.59398 * 10 9 7 20 20 H 1.08999 * 110.95040 * 34.30329 * 10 9 7 21 21 H 1.09004 * 114.59825 * 114.98376 * 13 11 10 22 22 H 1.09003 * 114.64003 * 341.08153 * 13 11 10 23 23 H 1.09001 * 114.64538 * 293.04066 * 14 13 11 24 24 H 1.08998 * 114.64692 * 158.95926 * 14 13 11 25 25 H 1.08999 * 110.39119 * 290.33244 * 17 9 7 26 26 H 1.08997 * 110.39389 * 52.61144 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7465 0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0215 -1.2420 0.3769 9 7 1.4130 -2.3374 -0.4796 10 6 0.2372 -2.4084 -1.4023 11 6 0.4750 -3.7347 -2.1053 12 1 1.3340 -3.7177 -2.7761 13 6 -0.4715 -4.8685 -2.3529 14 6 0.7429 -5.6839 -1.7909 15 6 0.7035 -4.5840 -0.7798 16 1 -0.2012 -4.5883 -0.1721 17 6 1.8032 -3.7461 -0.1785 18 1 -0.4849 -0.8358 0.0843 19 1 -0.6976 -2.4240 -0.8418 20 1 0.2496 -1.5827 -2.1138 21 1 -0.6941 -5.0525 -3.4040 22 1 -1.3545 -4.8712 -1.7137 23 1 1.6260 -5.6825 -2.4299 24 1 0.4875 -6.6691 -1.4009 25 1 2.7596 -3.9832 -0.6446 26 1 1.8573 -3.9033 0.8987 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000711178053.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:22 Heat of formation + Delta-G solvation = 80.726971 kcal Electronic energy + Delta-G solvation = -9763.347169 eV Core-core repulsion = 8037.885074 eV Total energy + Delta-G solvation = -1725.462095 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.98002 -36.54881 -33.30425 -29.68169 -28.59451 -24.58893 -24.33654 -21.63668 -21.07356 -19.49526 -16.56965 -16.18318 -15.55709 -15.47164 -15.20202 -14.32704 -13.85902 -12.74753 -12.73178 -12.62710 -12.39301 -12.32301 -12.08776 -11.91000 -11.59606 -11.46396 -10.61527 -9.88575 -9.08170 -8.37947 -5.43873 1.53535 1.62985 1.82112 2.58219 2.76414 3.14674 3.33070 3.55202 3.82214 3.98741 4.41895 4.50231 4.59129 4.66166 4.79393 4.86562 4.95865 5.03541 5.15210 5.20484 5.35957 5.48387 5.59521 6.22579 6.77985 7.60577 8.25659 8.94340 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.103656 B = 0.014127 C = 0.013322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 270.058279 B = 1981.516594 C = 2101.286187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.084 4.084 3 Si 1.125 2.875 4 H -0.288 1.288 5 H -0.272 1.272 6 H -0.279 1.279 7 C -0.346 4.346 8 H 0.058 0.942 9 N -0.637 5.637 10 C 0.165 3.835 11 C -0.169 4.169 12 H 0.095 0.905 13 C -0.096 4.096 14 C -0.080 4.080 15 C -0.162 4.162 16 H 0.083 0.917 17 C 0.144 3.856 18 H 0.253 0.747 19 H 0.009 0.991 20 H 0.013 0.987 21 H 0.088 0.912 22 H 0.090 0.910 23 H 0.098 0.902 24 H 0.091 0.909 25 H 0.032 0.968 26 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.034 -9.507 -4.461 10.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.279 4.279 3 Si 0.947 3.053 4 H -0.214 1.214 5 H -0.197 1.197 6 H -0.205 1.205 7 C -0.475 4.475 8 H 0.076 0.924 9 N -0.365 5.365 10 C 0.040 3.960 11 C -0.189 4.189 12 H 0.114 0.886 13 C -0.134 4.134 14 C -0.117 4.117 15 C -0.181 4.181 16 H 0.101 0.899 17 C 0.020 3.980 18 H 0.064 0.936 19 H 0.026 0.974 20 H 0.032 0.968 21 H 0.107 0.893 22 H 0.108 0.892 23 H 0.116 0.884 24 H 0.110 0.890 25 H 0.050 0.950 26 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 0.956 -7.754 -4.456 8.994 hybrid contribution 0.090 -1.224 0.525 1.335 sum 1.047 -8.978 -3.931 9.856 Atomic orbital electron populations 1.70888 1.07550 1.29416 1.51272 1.27451 0.96752 1.04907 0.98786 0.82747 0.73709 0.71345 0.77454 1.21354 1.19718 1.20494 1.20083 0.96837 0.88557 1.41986 0.92392 1.46328 1.36495 1.01252 1.52465 1.20841 0.89301 0.95211 0.90611 1.23836 1.02916 0.93547 0.98599 0.88641 1.22788 0.95841 0.92452 1.02315 1.22636 0.98354 0.95878 0.94877 1.23467 0.98965 1.00170 0.95546 0.89900 1.20745 0.96165 0.84530 0.96524 0.93638 0.97356 0.96804 0.89321 0.89160 0.88386 0.89015 0.95035 0.96392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.47 13.02 21.65 0.28 -61.19 15 2 C -0.08 -5.09 5.22 84.86 0.44 -4.65 15 3 Si 1.12 53.29 29.98 68.60 2.06 55.35 15 4 H -0.29 -13.68 7.11 99.48 0.71 -12.98 15 5 H -0.27 -11.84 7.11 99.48 0.71 -11.13 15 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 15 7 C -0.35 -21.10 10.15 84.03 0.85 -20.24 15 8 H 0.06 3.49 7.94 -2.91 -0.02 3.46 15 9 N -0.64 -35.42 3.35 -692.67 -2.32 -37.74 15 10 C 0.16 8.36 5.00 85.43 0.43 8.78 15 11 C -0.17 -6.34 4.45 -18.84 -0.08 -6.42 15 12 H 0.10 3.56 7.59 -2.39 -0.02 3.54 15 13 C -0.10 -2.57 8.07 20.95 0.17 -2.40 15 14 C -0.08 -1.99 8.10 21.89 0.18 -1.81 15 15 C -0.16 -5.77 4.32 -20.36 -0.09 -5.86 15 16 H 0.08 3.06 7.29 -2.39 -0.02 3.04 15 17 C 0.14 6.48 7.10 85.12 0.60 7.08 15 18 H 0.25 16.70 5.97 -92.71 -0.55 16.15 15 19 H 0.01 0.46 6.97 -2.39 -0.02 0.44 15 20 H 0.01 0.76 8.05 -2.39 -0.02 0.74 15 21 H 0.09 1.94 8.14 -2.38 -0.02 1.92 15 22 H 0.09 2.38 7.49 -2.39 -0.02 2.36 15 23 H 0.10 2.28 7.61 -2.39 -0.02 2.26 15 24 H 0.09 1.80 8.14 -2.39 -0.02 1.78 15 25 H 0.03 1.36 8.14 -2.39 -0.02 1.34 15 26 H 0.02 0.83 8.14 -2.39 -0.02 0.81 15 Total: -1.00 -70.95 211.56 3.88 -67.08 By element: Atomic # 1 Polarization: 0.67 SS G_CDS: 1.36 Total: 2.03 kcal Atomic # 6 Polarization: -28.03 SS G_CDS: 2.50 Total: -25.53 kcal Atomic # 7 Polarization: -96.89 SS G_CDS: -2.04 Total: -98.93 kcal Atomic # 14 Polarization: 53.29 SS G_CDS: 2.06 Total: 55.35 kcal Total: -70.95 3.88 -67.08 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000711178053.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.802 kcal (2) G-P(sol) polarization free energy of solvation -70.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds