Wall clock time and date at job start Mon Mar 30 2020 02:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 N 1.40292 * 126.84200 * 90.01877 * 10 9 7 12 12 N 1.28737 * 108.19255 * 179.97438 * 11 10 9 13 13 C 1.33299 * 109.98169 * 359.97438 * 12 11 10 14 14 C 1.35863 * 108.85824 * 359.76047 * 13 12 11 15 15 N 1.39277 * 126.67913 * 180.27164 * 14 13 12 16 16 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 17 17 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 18 18 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 19 19 H 1.08005 * 125.56726 * 180.02562 * 13 12 11 20 20 H 0.96994 * 120.00381 * 180.13511 * 15 14 13 21 21 H 0.97003 * 119.99526 * 0.13873 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 7 2.7536 -4.2548 1.1074 12 7 3.5444 -5.1812 0.6907 13 6 3.5592 -5.2022 -0.6420 14 6 2.7248 -4.2354 -1.1057 15 7 2.4573 -3.9368 -2.4395 16 1 -0.4850 -0.8400 0.0004 17 1 0.6281 -2.5591 0.8866 18 1 0.6207 -2.5548 -0.8933 19 1 4.1366 -5.8800 -1.2533 20 1 1.8426 -3.2204 -2.6623 21 1 2.8858 -4.4455 -3.1457 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713434356.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:25 Heat of formation + Delta-G solvation = 84.237196 kcal Electronic energy + Delta-G solvation = -9292.048049 eV Core-core repulsion = 7397.771914 eV Total energy + Delta-G solvation = -1894.276135 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.071 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -41.01227 -34.91092 -33.94115 -31.91804 -28.19424 -27.14159 -23.57230 -21.24039 -20.61189 -17.55572 -16.46388 -16.12327 -15.15003 -14.73662 -13.89744 -13.32079 -12.64207 -12.13260 -11.28963 -10.97573 -10.93920 -10.85197 -10.26719 -10.20532 -9.67733 -8.69161 -8.47083 -7.38777 -6.71160 -4.47914 2.43754 3.07839 3.30259 3.33626 3.39829 3.51940 4.25181 4.33734 5.02643 5.49186 5.64645 5.88556 6.43705 6.65025 6.96387 7.11352 7.53178 7.77461 7.95861 8.17101 8.45368 9.15024 9.21701 10.66431 Molecular weight = 168.07amu Principal moments of inertia in cm(-1) A = 0.069179 B = 0.014005 C = 0.013619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.651229 B = 1998.876602 C = 2055.520136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.028 3.972 3 Si 1.077 2.923 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.620 4.620 8 H 0.060 0.940 9 C 0.245 3.755 10 N -0.358 5.358 11 N -0.099 5.099 12 N -0.242 5.242 13 C -0.168 4.168 14 C 0.329 3.671 15 N -0.846 5.846 16 H 0.268 0.732 17 H 0.049 0.951 18 H 0.038 0.962 19 H 0.169 0.831 20 H 0.406 0.594 21 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.994 -4.306 -6.037 7.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.178 4.178 3 Si 0.903 3.097 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.658 4.658 8 H 0.078 0.922 9 C 0.126 3.874 10 N -0.151 5.151 11 N -0.078 5.078 12 N -0.110 5.110 13 C -0.332 4.332 14 C 0.092 3.908 15 N -0.398 5.398 16 H 0.078 0.922 17 H 0.067 0.933 18 H 0.055 0.945 19 H 0.186 0.814 20 H 0.235 0.765 21 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 2.799 -2.685 -4.352 5.830 hybrid contribution -0.019 -1.405 -1.602 2.131 sum 2.780 -4.090 -5.954 7.740 Atomic orbital electron populations 1.70857 1.06764 1.30571 1.45091 1.25949 0.96257 1.02774 0.92775 0.83415 0.74842 0.74453 0.76965 1.20369 1.21000 1.21171 1.22146 0.95175 0.90553 1.57930 0.92199 1.19740 0.86889 0.82109 0.98689 1.50839 1.34558 1.26731 1.03021 1.81914 1.12960 1.07107 1.05817 1.73974 1.12895 1.13280 1.10846 1.22132 1.11616 1.07617 0.91847 1.18757 0.95240 0.93670 0.83122 1.41358 1.54544 1.42750 1.01114 0.92151 0.93269 0.94481 0.81377 0.76465 0.75863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.37 13.65 55.43 0.76 -24.62 14 2 C 0.03 0.76 5.46 -17.82 -0.10 0.67 14 3 Si 1.08 24.13 29.90 -169.99 -5.08 19.05 14 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 14 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 14 6 H -0.29 -6.09 7.11 56.52 0.40 -5.69 14 7 C -0.62 -16.89 9.39 -34.44 -0.32 -17.22 14 8 H 0.06 1.71 7.81 -52.49 -0.41 1.30 14 9 C 0.24 6.08 5.43 -5.19 -0.03 6.05 14 10 N -0.36 -8.42 3.67 -61.43 -0.23 -8.64 14 11 N -0.10 -2.44 13.81 60.35 0.83 -1.60 14 12 N -0.24 -5.42 12.32 30.25 0.37 -5.04 14 13 C -0.17 -3.21 11.90 -17.77 -0.21 -3.42 14 14 C 0.33 6.48 8.09 -152.54 -1.23 5.24 14 15 N -0.85 -12.61 9.11 31.25 0.28 -12.32 14 16 H 0.27 7.43 7.22 -40.82 -0.29 7.13 14 17 H 0.05 1.29 8.01 -51.93 -0.42 0.87 14 18 H 0.04 0.88 7.50 -51.93 -0.39 0.49 14 19 H 0.17 2.48 8.06 -52.48 -0.42 2.06 14 20 H 0.41 6.13 8.28 -40.82 -0.34 5.80 14 21 H 0.41 4.43 8.96 -40.82 -0.37 4.06 14 LS Contribution 199.88 15.07 3.01 3.01 Total: -1.00 -31.07 199.88 -3.38 -34.45 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -1.43 Total: 4.39 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -1.89 Total: -8.67 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: 2.02 Total: -52.23 kcal Atomic # 14 Polarization: 24.13 SS G_CDS: -5.08 Total: 19.05 kcal Total LS contribution 3.01 Total: 3.01 kcal Total: -31.07 -3.38 -34.45 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713434356.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.682 kcal (2) G-P(sol) polarization free energy of solvation -31.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds