Wall clock time and date at job start Mon Mar 30 2020 01:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99688 * 2 1 4 4 H 1.48492 * 109.47418 * 270.00111 * 3 2 1 5 5 H 1.48501 * 109.46977 * 30.00306 * 3 2 1 6 6 H 1.48505 * 109.46899 * 149.99953 * 3 2 1 7 7 C 1.38808 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00721 * 0.02562 * 7 2 1 9 9 N 1.36937 * 119.99846 * 180.02562 * 7 2 1 10 10 C 1.46501 * 120.00224 * 180.02562 * 9 7 2 11 11 H 1.09002 * 115.54982 * 9.41617 * 10 9 7 12 12 C 1.53005 * 117.49876 * 223.74562 * 10 9 7 13 13 C 1.52999 * 59.99973 * 252.48587 * 12 10 9 14 14 H 1.08995 * 117.49529 * 107.48826 * 13 12 10 15 15 C 1.52995 * 117.50039 * 252.50950 * 13 12 10 16 16 C 1.53001 * 117.50177 * 197.24411 * 15 13 12 17 17 C 1.52995 * 60.00232 * 252.51054 * 16 15 13 18 18 H 0.96991 * 120.00112 * 359.97438 * 1 2 3 19 19 H 0.97003 * 120.00021 * 359.97438 * 9 7 2 20 20 H 1.09004 * 117.49602 * 359.97438 * 12 10 9 21 21 H 1.09004 * 117.49357 * 144.97269 * 12 10 9 22 22 H 1.09004 * 115.54923 * 342.95909 * 15 13 12 23 23 H 1.09003 * 117.49468 * 0.02562 * 16 15 13 24 24 H 1.08999 * 117.49807 * 145.02137 * 16 15 13 25 25 H 1.08996 * 117.50120 * 252.51059 * 17 16 15 26 26 H 1.09004 * 117.52029 * 107.48001 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4704 -2.1375 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1122 -2.4708 -0.0011 11 1 3.5072 -3.3629 -0.1633 12 6 5.3142 -2.5934 0.9376 13 6 5.5319 -2.4668 -0.5715 14 1 5.9211 -1.5202 -0.9461 15 6 5.9937 -3.7153 -1.3258 16 6 6.5948 -3.5172 -2.7187 17 6 5.1989 -4.1249 -2.5674 18 1 -0.4850 0.8400 0.0004 19 1 3.8646 -0.3620 0.0004 20 1 5.5601 -1.7299 1.5557 21 1 5.4996 -3.5660 1.3934 22 1 6.4072 -4.5120 -0.7074 23 1 6.6617 -2.4973 -3.0976 24 1 7.4042 -4.1835 -3.0170 25 1 5.0899 -5.1911 -2.7660 26 1 4.3468 -3.5052 -2.8466 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716575117.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:05 Heat of formation + Delta-G solvation = 57.494193 kcal Electronic energy + Delta-G solvation = -9190.298601 eV Core-core repulsion = 7463.829057 eV Total energy + Delta-G solvation = -1726.469544 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.14794 -35.38695 -32.87762 -30.31544 -23.97429 -22.90216 -22.16534 -20.51716 -19.58276 -17.53735 -15.37886 -15.23670 -14.16973 -14.09103 -12.82876 -12.44937 -12.15117 -11.42476 -11.25659 -11.13611 -10.96919 -10.70481 -10.39873 -10.20696 -9.89971 -9.68523 -9.19001 -8.70448 -7.17936 -5.84398 -3.19567 3.33732 3.37006 3.41413 4.01151 4.52713 4.57559 4.94202 5.18530 5.25733 5.35710 5.54550 5.67562 5.81067 5.86390 5.95318 6.00206 6.15766 6.35438 6.38179 6.53508 6.74194 6.82285 7.92654 8.35665 9.11989 9.84295 10.03180 11.33273 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.064644 B = 0.012039 C = 0.011841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.035641 B = 2325.200990 C = 2364.182979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.884 3.116 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.252 4.252 8 H 0.094 0.906 9 N -0.713 5.713 10 C 0.163 3.837 11 H 0.109 0.891 12 C -0.223 4.223 13 C -0.171 4.171 14 H 0.093 0.907 15 C -0.110 4.110 16 C -0.184 4.184 17 C -0.178 4.178 18 H 0.261 0.739 19 H 0.364 0.636 20 H 0.083 0.917 21 H 0.084 0.916 22 H 0.098 0.902 23 H 0.090 0.910 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.415 -5.242 -2.481 12.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.188 4.188 3 Si 0.713 3.287 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.382 4.382 8 H 0.112 0.888 9 N -0.349 5.349 10 C 0.050 3.950 11 H 0.127 0.873 12 C -0.264 4.264 13 C -0.192 4.192 14 H 0.111 0.889 15 C -0.128 4.128 16 C -0.221 4.221 17 C -0.215 4.215 18 H 0.072 0.928 19 H 0.197 0.803 20 H 0.102 0.898 21 H 0.103 0.897 22 H 0.116 0.884 23 H 0.109 0.891 24 H 0.105 0.895 25 H 0.106 0.894 26 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 11.071 -5.250 -2.485 12.502 hybrid contribution 0.747 1.267 0.041 1.471 sum 11.818 -3.983 -2.445 12.708 Atomic orbital electron populations 1.69696 1.05084 1.26056 1.56683 1.24682 0.95288 0.97279 1.01521 0.86563 0.79271 0.84882 0.77937 1.20870 1.21435 1.20298 1.19126 0.80150 0.95062 1.43834 0.88783 1.42379 1.04112 1.01478 1.86903 1.20966 0.85303 0.90884 0.97890 0.87276 1.23650 1.09416 1.01705 0.91643 1.22345 1.05143 0.96696 0.95061 0.88872 1.21648 1.03410 0.98443 0.89340 1.22933 0.96622 1.01964 1.00606 1.22975 0.95235 1.00735 1.02564 0.92848 0.80311 0.89840 0.89737 0.88390 0.89104 0.89491 0.89375 0.88209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.10 13.97 55.49 0.78 -28.32 15 2 C 0.01 0.26 5.50 -17.43 -0.10 0.16 15 3 Si 0.88 22.16 27.74 -169.99 -4.71 17.45 15 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 15 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 15 6 H -0.28 -6.60 6.52 56.52 0.37 -6.23 15 7 C -0.25 -7.20 10.46 -15.06 -0.16 -7.35 15 8 H 0.09 2.84 8.05 -52.49 -0.42 2.42 15 9 N -0.71 -17.44 5.42 -53.42 -0.29 -17.73 15 10 C 0.16 3.30 6.26 -67.93 -0.43 2.88 15 11 H 0.11 2.21 8.12 -51.93 -0.42 1.78 15 12 C -0.22 -3.87 10.18 -26.73 -0.27 -4.15 15 13 C -0.17 -2.93 5.79 -90.62 -0.52 -3.45 15 14 H 0.09 1.64 8.14 -51.93 -0.42 1.22 15 15 C -0.11 -1.59 5.87 -90.62 -0.53 -2.13 15 16 C -0.18 -2.39 10.25 -26.73 -0.27 -2.67 15 17 C -0.18 -2.49 10.18 -26.73 -0.27 -2.76 15 18 H 0.26 7.77 8.31 -40.82 -0.34 7.43 15 19 H 0.36 8.74 5.88 -40.82 -0.24 8.50 15 20 H 0.08 1.48 8.14 -51.93 -0.42 1.06 15 21 H 0.08 1.30 8.14 -51.93 -0.42 0.88 15 22 H 0.10 1.30 8.14 -51.93 -0.42 0.88 15 23 H 0.09 1.20 8.14 -51.93 -0.42 0.78 15 24 H 0.09 0.96 8.14 -51.93 -0.42 0.54 15 25 H 0.09 1.07 8.14 -51.93 -0.42 0.65 15 26 H 0.10 1.57 8.14 -51.93 -0.42 1.15 15 LS Contribution 227.85 15.07 3.43 3.43 Total: -1.00 -30.08 227.85 -6.98 -37.07 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -3.63 Total: 7.56 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -2.55 Total: -19.47 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 0.49 Total: -46.05 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.71 Total: 17.45 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -30.08 -6.98 -37.07 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716575117.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.562 kcal (2) G-P(sol) polarization free energy of solvation -30.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds