Wall clock time and date at job start Mon Mar 30 2020 01:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99688 * 2 1 4 4 H 1.48492 * 109.47418 * 270.00111 * 3 2 1 5 5 H 1.48501 * 109.46977 * 30.00306 * 3 2 1 6 6 H 1.48505 * 109.46899 * 149.99953 * 3 2 1 7 7 C 1.38808 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00721 * 0.02562 * 7 2 1 9 9 N 1.36937 * 119.99846 * 180.02562 * 7 2 1 10 10 C 1.46501 * 120.00224 * 180.02562 * 9 7 2 11 11 H 1.09002 * 115.54982 * 9.41617 * 10 9 7 12 12 C 1.53005 * 117.49876 * 223.74562 * 10 9 7 13 13 C 1.52999 * 59.99973 * 252.48587 * 12 10 9 14 14 H 1.08995 * 117.49529 * 107.48826 * 13 12 10 15 15 C 1.52995 * 117.50039 * 252.50950 * 13 12 10 16 16 C 1.53001 * 117.50177 * 197.24411 * 15 13 12 17 17 C 1.52995 * 60.00232 * 252.51054 * 16 15 13 18 18 H 0.96991 * 120.00112 * 359.97438 * 1 2 3 19 19 H 0.97003 * 120.00021 * 359.97438 * 9 7 2 20 20 H 1.09004 * 117.49602 * 359.97438 * 12 10 9 21 21 H 1.09004 * 117.49357 * 144.97269 * 12 10 9 22 22 H 1.09004 * 115.54923 * 342.95909 * 15 13 12 23 23 H 1.09003 * 117.49468 * 0.02562 * 16 15 13 24 24 H 1.08999 * 117.49807 * 145.02137 * 16 15 13 25 25 H 1.08996 * 117.50120 * 252.51059 * 17 16 15 26 26 H 1.09004 * 117.52029 * 107.48001 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4704 -2.1375 -0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1122 -2.4708 -0.0011 11 1 3.5072 -3.3629 -0.1633 12 6 5.3142 -2.5934 0.9376 13 6 5.5319 -2.4668 -0.5715 14 1 5.9211 -1.5202 -0.9461 15 6 5.9937 -3.7153 -1.3258 16 6 6.5948 -3.5172 -2.7187 17 6 5.1989 -4.1249 -2.5674 18 1 -0.4850 0.8400 0.0004 19 1 3.8646 -0.3620 0.0004 20 1 5.5601 -1.7299 1.5557 21 1 5.4996 -3.5660 1.3934 22 1 6.4072 -4.5120 -0.7074 23 1 6.6617 -2.4973 -3.0976 24 1 7.4042 -4.1835 -3.0170 25 1 5.0899 -5.1911 -2.7660 26 1 4.3468 -3.5052 -2.8466 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716575117.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:05 Heat of formation + Delta-G solvation = 38.724895 kcal Electronic energy + Delta-G solvation = -9191.112499 eV Core-core repulsion = 7463.829057 eV Total energy + Delta-G solvation = -1727.283442 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.51803 -36.85740 -34.80912 -32.34796 -25.88917 -24.35174 -23.25128 -22.15130 -20.99361 -19.54456 -17.07874 -16.50043 -16.04963 -15.50187 -14.76622 -13.97993 -13.90809 -13.22484 -12.92610 -12.55243 -12.28821 -12.15062 -12.13573 -11.90148 -11.61896 -11.22855 -10.73229 -10.46657 -9.10865 -8.08638 -5.41901 1.34162 1.37479 1.44698 2.42945 2.80675 3.12430 3.34831 3.46236 3.94414 4.06890 4.16438 4.27413 4.41881 4.59092 4.63028 4.84136 4.97688 5.07923 5.18593 5.33450 5.37009 5.43237 5.70921 6.16629 6.99328 7.75082 7.94035 9.12426 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.064644 B = 0.012039 C = 0.011841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.035641 B = 2325.200990 C = 2364.182979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.059 4.059 3 Si 0.956 3.044 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.255 1.255 7 C -0.242 4.242 8 H 0.061 0.939 9 N -0.722 5.722 10 C 0.121 3.879 11 H 0.099 0.901 12 C -0.201 4.201 13 C -0.147 4.147 14 H 0.091 0.909 15 C -0.121 4.121 16 C -0.168 4.168 17 C -0.186 4.186 18 H 0.261 0.739 19 H 0.367 0.633 20 H 0.083 0.917 21 H 0.109 0.891 22 H 0.119 0.881 23 H 0.086 0.914 24 H 0.114 0.886 25 H 0.108 0.892 26 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.175 -5.400 -2.588 15.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.251 4.251 3 Si 0.782 3.218 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.180 1.180 7 C -0.372 4.372 8 H 0.079 0.921 9 N -0.360 5.360 10 C 0.010 3.990 11 H 0.117 0.883 12 C -0.241 4.241 13 C -0.168 4.168 14 H 0.109 0.891 15 C -0.139 4.139 16 C -0.204 4.204 17 C -0.223 4.223 18 H 0.069 0.931 19 H 0.200 0.800 20 H 0.102 0.898 21 H 0.127 0.873 22 H 0.137 0.863 23 H 0.105 0.895 24 H 0.132 0.868 25 H 0.126 0.874 26 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 13.899 -5.454 -2.591 15.154 hybrid contribution -0.090 1.174 0.060 1.179 sum 13.808 -4.280 -2.531 14.676 Atomic orbital electron populations 1.69871 1.07054 1.26947 1.58988 1.25508 0.96179 1.01268 1.02161 0.85408 0.78563 0.79577 0.78229 1.20247 1.21666 1.17979 1.19083 0.82167 0.93853 1.42139 0.92133 1.42268 1.02605 1.03150 1.88024 1.21161 0.86648 0.89066 1.02117 0.88269 1.23655 1.05428 1.03056 0.91959 1.22324 1.01073 0.98045 0.95341 0.89104 1.21716 1.04385 0.97841 0.89993 1.23032 0.96476 1.02282 0.98659 1.22973 0.95187 1.01620 1.02556 0.93052 0.79968 0.89831 0.87272 0.86342 0.89503 0.86764 0.87417 0.90818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.17 13.97 21.65 0.30 -62.87 15 2 C -0.06 -3.54 5.50 84.86 0.47 -3.07 15 3 Si 0.96 45.95 27.74 68.60 1.90 47.85 15 4 H -0.28 -12.94 7.11 99.48 0.71 -12.24 15 5 H -0.29 -13.96 7.11 99.48 0.71 -13.26 15 6 H -0.26 -11.19 6.52 99.48 0.65 -10.55 15 7 C -0.24 -14.13 10.46 84.03 0.88 -13.25 15 8 H 0.06 3.84 8.05 -2.91 -0.02 3.82 15 9 N -0.72 -35.14 5.42 -322.93 -1.75 -36.89 15 10 C 0.12 4.79 6.26 44.99 0.28 5.08 15 11 H 0.10 4.07 8.12 -2.39 -0.02 4.05 15 12 C -0.20 -6.42 10.18 30.60 0.31 -6.10 15 13 C -0.15 -4.67 5.79 -10.79 -0.06 -4.73 15 14 H 0.09 2.96 8.14 -2.39 -0.02 2.94 15 15 C -0.12 -3.13 5.87 -10.79 -0.06 -3.19 15 16 C -0.17 -3.78 10.25 30.59 0.31 -3.46 15 17 C -0.19 -4.82 10.18 30.59 0.31 -4.51 15 18 H 0.26 15.92 8.31 -92.71 -0.77 15.15 15 19 H 0.37 17.10 5.88 -92.71 -0.55 16.56 15 20 H 0.08 2.71 8.14 -2.39 -0.02 2.69 15 21 H 0.11 2.96 8.14 -2.38 -0.02 2.94 15 22 H 0.12 2.63 8.14 -2.39 -0.02 2.61 15 23 H 0.09 2.04 8.14 -2.39 -0.02 2.02 15 24 H 0.11 1.99 8.14 -2.39 -0.02 1.97 15 25 H 0.11 2.34 8.14 -2.39 -0.02 2.32 15 26 H 0.07 2.29 8.14 -2.38 -0.02 2.28 15 Total: -1.00 -65.27 227.85 3.44 -61.83 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: 0.55 Total: 23.32 kcal Atomic # 6 Polarization: -35.68 SS G_CDS: 2.44 Total: -33.24 kcal Atomic # 7 Polarization: -98.31 SS G_CDS: -1.45 Total: -99.76 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.90 Total: 47.85 kcal Total: -65.27 3.44 -61.83 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716575117.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.553 kcal (2) G-P(sol) polarization free energy of solvation -65.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds