Wall clock time and date at job start Mon Mar 30 2020 01:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00269 * 2 1 4 4 H 1.48505 * 109.47223 * 274.81550 * 3 2 1 5 5 H 1.48502 * 109.46892 * 34.81194 * 3 2 1 6 6 H 1.48502 * 109.47328 * 154.81105 * 3 2 1 7 7 C 1.38813 * 119.99490 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99737 * 187.58144 * 7 2 1 9 9 N 1.36934 * 120.00487 * 7.58458 * 7 2 1 10 10 C 1.47584 * 134.48872 * 7.04836 * 9 7 2 11 11 C 1.53948 * 86.11635 * 155.35824 * 10 9 7 12 12 C 1.47584 * 134.49336 * 187.04604 * 9 7 2 13 13 H 1.08997 * 113.76693 * 90.34193 * 12 9 7 14 14 C 1.52997 * 113.76917 * 318.94081 * 12 9 7 15 15 C 1.52994 * 117.49899 * 152.12943 * 14 12 9 16 16 C 1.52998 * 117.50012 * 83.50556 * 14 12 9 17 17 H 0.97002 * 119.99819 * 359.97438 * 1 2 3 18 18 H 1.08993 * 113.77310 * 41.05916 * 10 9 7 19 19 H 1.08998 * 113.76583 * 269.65729 * 10 9 7 20 20 H 1.09001 * 113.74185 * 269.26238 * 11 10 9 21 21 H 1.09005 * 113.74125 * 137.94805 * 11 10 9 22 22 H 1.09007 * 115.55146 * 297.83797 * 14 12 9 23 23 H 1.09006 * 117.49620 * 359.97438 * 15 14 12 24 24 H 1.08998 * 117.50536 * 145.01931 * 15 14 12 25 25 H 1.08996 * 117.49987 * 214.97738 * 16 14 12 26 26 H 1.09001 * 117.49324 * 359.97438 * 16 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.3960 2.1051 -1.3952 5 1 1.5022 2.6211 0.7993 6 1 3.5949 1.4128 0.5959 7 6 2.0101 -1.2022 -0.0005 8 1 3.0831 -1.2064 0.1229 9 7 1.3344 -2.3828 -0.1576 10 6 -0.0621 -2.7412 -0.4730 11 6 0.5090 -4.0674 -1.0069 12 6 1.7102 -3.8079 -0.0795 13 1 1.5977 -4.2379 0.9158 14 6 3.0632 -4.1249 -0.7195 15 6 3.8421 -5.3213 -0.1692 16 6 4.3164 -3.8974 0.1282 17 1 -0.4850 0.8401 0.0004 18 1 -0.5130 -2.1155 -1.2431 19 1 -0.6950 -2.8579 0.4067 20 1 0.7599 -4.0419 -2.0673 21 1 -0.0791 -4.9420 -0.7288 22 1 3.1359 -3.9253 -1.7887 23 1 3.3907 -5.8823 0.6491 24 1 4.4272 -5.9093 -0.8763 25 1 5.2135 -3.5486 -0.3832 26 1 4.1768 -3.5215 1.1418 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885224122.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:17 Heat of formation + Delta-G solvation = 54.493196 kcal Electronic energy + Delta-G solvation = -9558.718405 eV Core-core repulsion = 7832.118728 eV Total energy + Delta-G solvation = -1726.599677 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.98098 -36.97233 -34.16341 -29.81304 -26.97758 -25.27030 -23.09292 -21.88428 -20.81734 -18.74127 -16.98725 -16.28783 -15.97461 -15.35770 -14.66005 -14.15537 -13.36856 -12.97483 -12.68468 -12.61165 -12.31686 -12.24150 -11.97436 -11.64840 -11.56136 -10.90901 -10.74067 -10.60333 -8.87783 -7.88760 -5.18879 1.43181 1.45488 1.54149 2.46705 2.91640 3.33819 3.61878 3.87330 4.01618 4.24104 4.36183 4.41027 4.63177 4.82940 4.89404 5.02955 5.05396 5.13331 5.29909 5.33454 5.39594 5.56954 5.78310 5.97878 6.96708 7.65986 8.64279 9.30280 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.053982 B = 0.017127 C = 0.013483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.570759 B = 1634.461074 C = 2076.214123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.077 4.077 3 Si 0.974 3.026 4 H -0.288 1.288 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.217 4.217 8 H 0.081 0.919 9 N -0.632 5.632 10 C 0.154 3.846 11 C -0.131 4.131 12 C 0.165 3.835 13 H 0.045 0.955 14 C -0.158 4.158 15 C -0.148 4.148 16 C -0.186 4.186 17 H 0.246 0.754 18 H 0.028 0.972 19 H 0.016 0.984 20 H 0.082 0.918 21 H 0.088 0.912 22 H 0.094 0.906 23 H 0.100 0.900 24 H 0.114 0.886 25 H 0.096 0.904 26 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.438 -9.162 -1.463 10.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.269 4.269 3 Si 0.803 3.197 4 H -0.215 1.215 5 H -0.222 1.222 6 H -0.192 1.192 7 C -0.346 4.346 8 H 0.099 0.901 9 N -0.358 5.358 10 C 0.029 3.971 11 C -0.168 4.168 12 C 0.060 3.940 13 H 0.062 0.938 14 C -0.177 4.177 15 C -0.186 4.186 16 C -0.223 4.223 17 H 0.055 0.945 18 H 0.046 0.954 19 H 0.034 0.966 20 H 0.100 0.900 21 H 0.106 0.894 22 H 0.113 0.887 23 H 0.118 0.882 24 H 0.133 0.867 25 H 0.115 0.885 26 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.480 -8.835 -1.424 10.493 hybrid contribution 0.038 1.399 0.265 1.425 sum 5.518 -7.435 -1.159 9.331 Atomic orbital electron populations 1.70038 1.06495 1.25377 1.59048 1.25646 0.96510 1.00932 1.03781 0.85108 0.77842 0.79474 0.77275 1.21498 1.22244 1.19205 1.19396 0.91151 0.83598 1.40455 0.90091 1.46607 1.06847 1.00461 1.81845 1.22064 0.87298 0.92201 0.95559 1.23578 0.96757 0.96980 0.99530 1.21956 0.92713 0.83816 0.95519 0.93790 1.22415 0.92497 1.04237 0.98552 1.22995 1.02307 0.89890 1.03362 1.22789 0.98156 1.00790 1.00566 0.94495 0.95356 0.96618 0.89965 0.89400 0.88742 0.88153 0.86729 0.88520 0.90781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.54 11.76 21.65 0.25 -60.28 15 2 C -0.08 -4.55 5.49 84.86 0.47 -4.08 15 3 Si 0.97 47.51 29.56 68.60 2.03 49.54 15 4 H -0.29 -13.81 7.11 99.48 0.71 -13.10 15 5 H -0.30 -14.46 7.11 99.48 0.71 -13.75 15 6 H -0.27 -12.27 7.11 99.48 0.71 -11.56 15 7 C -0.22 -12.60 10.49 84.03 0.88 -11.72 15 8 H 0.08 4.53 7.84 -2.91 -0.02 4.51 15 9 N -0.63 -33.58 3.56 -694.07 -2.47 -36.06 15 10 C 0.15 7.68 7.31 86.48 0.63 8.32 15 11 C -0.13 -4.91 7.86 31.26 0.25 -4.66 15 12 C 0.17 6.80 4.39 45.09 0.20 6.99 15 13 H 0.04 1.81 8.13 -2.39 -0.02 1.79 15 14 C -0.16 -5.51 5.55 -10.80 -0.06 -5.57 15 15 C -0.15 -3.87 10.24 30.59 0.31 -3.55 15 16 C -0.19 -6.01 10.25 30.59 0.31 -5.69 15 17 H 0.25 15.06 8.31 -92.71 -0.77 14.29 15 18 H 0.03 1.55 7.69 -2.39 -0.02 1.53 15 19 H 0.02 0.82 8.14 -2.39 -0.02 0.80 15 20 H 0.08 2.95 8.10 -2.39 -0.02 2.93 15 21 H 0.09 2.68 8.14 -2.38 -0.02 2.66 15 22 H 0.09 3.37 8.14 -2.38 -0.02 3.35 15 23 H 0.10 2.42 8.14 -2.38 -0.02 2.40 15 24 H 0.11 2.39 8.14 -2.39 -0.02 2.37 15 25 H 0.10 2.86 8.14 -2.39 -0.02 2.84 15 26 H 0.07 2.63 8.14 -2.39 -0.02 2.61 15 Total: -1.00 -67.04 224.85 3.94 -63.11 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: 1.13 Total: 3.67 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: 2.99 Total: -19.98 kcal Atomic # 7 Polarization: -94.12 SS G_CDS: -2.22 Total: -96.34 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.03 Total: 49.54 kcal Total: -67.04 3.94 -63.11 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885224122.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.599 kcal (2) G-P(sol) polarization free energy of solvation -67.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds