Wall clock time and date at job start Mon Mar 30 2020 02:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47473 * 179.97438 * 10 9 7 12 12 C 1.34597 * 126.43783 * 125.00017 * 11 10 9 13 13 N 1.31072 * 106.67933 * 180.02562 * 12 11 10 14 14 N 1.28839 * 107.98903 * 359.97438 * 13 12 11 15 15 N 1.28743 * 109.40039 * 359.73711 * 14 13 12 16 16 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 17 17 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 18 18 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 19 19 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 20 20 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 21 21 H 1.08006 * 126.66195 * 0.03258 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 7 5.4864 -2.6368 -0.0001 12 6 6.2858 -3.2580 0.8868 13 7 7.5194 -3.0035 0.5241 14 7 7.4796 -2.2650 -0.5308 15 7 6.2527 -2.0463 -0.8538 16 1 -0.4850 0.8401 -0.0004 17 1 3.8751 -0.6798 -0.8895 18 1 3.8745 -0.6810 0.8905 19 1 3.6577 -3.1507 0.8897 20 1 3.6584 -3.1504 -0.8902 21 1 5.9718 -3.8512 1.7330 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535663686.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:04 Heat of formation + Delta-G solvation = 86.514959 kcal Electronic energy + Delta-G solvation = -9136.770568 eV Core-core repulsion = 7242.593205 eV Total energy + Delta-G solvation = -1894.177363 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 168.071 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -45.08377 -37.32049 -35.04063 -33.42806 -32.38193 -27.86593 -24.81131 -24.43039 -22.44663 -19.41195 -17.99075 -17.91196 -16.64750 -16.36731 -15.54572 -14.84343 -14.16669 -13.86151 -13.39671 -13.00838 -12.74135 -12.22402 -12.07040 -11.92919 -11.59697 -11.56824 -11.21205 -10.83805 -8.36410 -6.41673 0.39108 1.25076 1.27671 1.31723 1.35931 1.43162 2.28919 2.99885 3.47023 3.57108 4.10131 4.15017 4.46781 4.51443 4.77946 5.01562 5.22351 5.33778 5.55125 6.12946 6.66497 7.24245 7.63354 8.78490 Molecular weight = 168.07amu Principal moments of inertia in cm(-1) A = 0.086425 B = 0.012409 C = 0.011346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 323.902257 B = 2255.960687 C = 2467.239886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.021 3.979 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.527 4.527 8 H 0.061 0.939 9 C -0.020 4.020 10 C 0.130 3.870 11 N -0.299 5.299 12 C 0.175 3.825 13 N -0.344 5.344 14 N -0.117 5.117 15 N -0.121 5.121 16 H 0.269 0.731 17 H 0.019 0.981 18 H 0.023 0.977 19 H 0.148 0.852 20 H 0.109 0.891 21 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.435 -5.450 3.281 9.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.566 4.566 8 H 0.080 0.920 9 C -0.059 4.059 10 C 0.011 3.989 11 N -0.101 5.101 12 C -0.122 4.122 13 N -0.193 5.193 14 N -0.112 5.112 15 N -0.108 5.108 16 H 0.078 0.922 17 H 0.038 0.962 18 H 0.041 0.959 19 H 0.166 0.834 20 H 0.127 0.873 21 H 0.303 0.697 Dipole moment (debyes) X Y Z Total from point charges 8.259 -4.769 2.454 9.848 hybrid contribution -0.876 0.605 0.366 1.126 sum 7.383 -4.164 2.821 8.933 Atomic orbital electron populations 1.69991 1.07802 1.28273 1.51599 1.25699 0.95367 1.02600 0.94126 0.85893 0.79237 0.79930 0.78947 1.19788 1.20700 1.18331 1.21084 0.90031 0.94212 1.51271 0.92048 1.19739 0.95519 0.93045 0.97553 1.22549 0.68012 1.00713 1.07599 1.49213 1.11973 1.31465 1.17440 1.28678 0.85092 0.99397 0.99069 1.74833 1.20893 1.14620 1.08972 1.78537 1.10715 1.12908 1.08991 1.78843 0.97762 1.17559 1.16641 0.92206 0.96239 0.95903 0.83396 0.87316 0.69680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.54 13.96 21.45 0.30 -54.24 14 2 C 0.02 1.15 5.47 84.66 0.46 1.61 14 3 Si 0.93 42.60 27.47 68.60 1.88 44.49 14 4 H -0.27 -12.32 7.11 99.48 0.71 -11.61 14 5 H -0.28 -12.58 7.11 99.48 0.71 -11.88 14 6 H -0.26 -11.36 6.54 99.48 0.65 -10.71 14 7 C -0.53 -26.55 9.66 25.60 0.25 -26.30 14 8 H 0.06 3.24 7.99 -2.91 -0.02 3.21 14 9 C -0.02 -0.83 4.19 29.85 0.12 -0.70 14 10 C 0.13 3.83 6.42 86.38 0.55 4.38 14 11 N -0.30 -9.03 3.44 -351.82 -1.21 -10.24 14 12 C 0.18 4.21 12.79 180.27 2.31 6.51 14 13 N -0.34 -10.98 12.36 -60.29 -0.74 -11.72 14 14 N -0.12 -4.39 13.43 37.01 0.50 -3.89 14 15 N -0.12 -4.49 13.08 37.02 0.48 -4.01 14 16 H 0.27 14.74 8.31 -92.71 -0.77 13.97 14 17 H 0.02 0.85 7.56 -2.39 -0.02 0.83 14 18 H 0.02 0.95 7.20 -2.39 -0.02 0.93 14 19 H 0.15 3.23 8.08 -2.39 -0.02 3.21 14 20 H 0.11 3.08 8.14 -2.39 -0.02 3.06 14 21 H 0.29 2.96 8.06 -2.91 -0.02 2.93 14 Total: -1.00 -66.24 198.36 6.08 -60.16 By element: Atomic # 1 Polarization: -7.22 SS G_CDS: 1.17 Total: -6.04 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: 3.70 Total: -14.50 kcal Atomic # 7 Polarization: -83.43 SS G_CDS: -0.67 Total: -84.10 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 1.88 Total: 44.49 kcal Total: -66.24 6.08 -60.16 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535663686.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.673 kcal (2) G-P(sol) polarization free energy of solvation -66.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds