Wall clock time and date at job start Mon Mar 30 2020 01:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.57992 * 119.98543 * 2 1 4 4 C 1.55995 * 80.73330 * 161.26448 * 3 2 1 5 5 C 1.54870 * 119.93152 * 98.34247 * 2 1 3 6 6 C 1.56749 * 106.36915 * 59.01327 * 4 3 2 7 7 N 1.49186 * 99.23726 * 317.77179 * 6 4 3 8 8 C 1.36940 * 129.44779 * 180.17610 * 7 6 4 9 9 H 1.07993 * 120.00391 * 179.97438 * 8 7 6 10 10 C 1.38816 * 119.99775 * 359.97438 * 8 7 6 11 11 N 1.31620 * 119.99849 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00061 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47120 * 90.00256 * 12 10 8 14 14 H 1.48501 * 109.47018 * 210.00109 * 12 10 8 15 15 H 1.48500 * 109.46857 * 329.99885 * 12 10 8 16 16 H 1.09002 * 109.47049 * 198.95716 * 1 2 3 17 17 H 1.09003 * 109.46598 * 318.95261 * 1 2 3 18 18 H 1.08997 * 109.47772 * 78.95341 * 1 2 3 19 19 H 1.09005 * 114.92479 * 48.42867 * 3 2 1 20 20 H 1.08991 * 114.70925 * 274.10124 * 3 2 1 21 21 H 1.09002 * 120.19937 * 197.24061 * 4 3 2 22 22 H 1.09003 * 113.74243 * 85.33421 * 5 2 1 23 23 H 1.08997 * 115.16673 * 311.88952 * 5 2 1 24 24 H 1.08999 * 111.44771 * 75.27956 * 6 4 3 25 25 H 1.09003 * 111.44128 * 200.21529 * 6 4 3 26 26 H 0.96994 * 120.00115 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.3196 1.3684 0.0000 4 6 3.4570 0.4222 0.4945 5 6 2.3028 -0.1947 1.3279 6 6 3.6535 -0.6556 -0.6265 7 7 2.2229 -0.9300 -0.9484 8 6 1.6877 -1.7974 -1.8630 9 1 0.6160 -1.8751 -1.9708 10 6 2.5229 -2.5769 -2.6516 11 7 3.8291 -2.4826 -2.5199 12 14 1.7930 -3.7596 -3.8997 13 1 1.6247 -3.0643 -5.2010 14 1 2.7030 -4.9203 -4.0727 15 1 0.4712 -4.2344 -3.4174 16 1 -0.3633 -0.9719 0.3339 17 1 -0.3632 0.7751 0.6749 18 1 -0.3634 0.1969 -1.0086 19 1 1.9811 2.0942 0.7395 20 1 2.4860 1.7985 -0.9876 21 1 4.3417 0.8350 0.9793 22 1 2.4514 -1.2397 1.6000 23 1 1.9632 0.4259 2.1571 24 1 4.1837 -0.2449 -1.4857 25 1 4.1537 -1.5443 -0.2415 26 1 4.4127 -3.0275 -3.0706 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001654315375.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:33 Heat of formation + Delta-G solvation = 58.377847 kcal Electronic energy + Delta-G solvation = -9836.194610 eV Core-core repulsion = 8109.763385 eV Total energy + Delta-G solvation = -1726.431226 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 167.101 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.29920 -35.01119 -31.53295 -31.24340 -27.19058 -25.89556 -25.28444 -21.21110 -20.10908 -18.14735 -16.68528 -15.96769 -15.72332 -14.90528 -14.16865 -14.11921 -13.77666 -13.15423 -12.85882 -12.64133 -12.37998 -12.07498 -11.91150 -11.75814 -11.39180 -11.05940 -10.82396 -10.70601 -8.85755 -7.89996 -5.20485 1.42995 1.46046 1.54481 2.46353 3.28913 3.41626 3.65890 3.78695 3.99114 4.12499 4.44385 4.78464 4.91377 4.95794 5.00601 5.01632 5.17881 5.25966 5.38092 5.39937 5.44912 5.55514 5.74269 6.05953 6.99082 7.67093 8.51247 9.26989 Molecular weight = 167.10amu Principal moments of inertia in cm(-1) A = 0.070447 B = 0.017680 C = 0.015198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.367345 B = 1583.305059 C = 1841.961589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.128 3.872 3 C -0.142 4.142 4 C -0.147 4.147 5 C -0.149 4.149 6 C 0.188 3.812 7 N -0.616 5.616 8 C -0.224 4.224 9 H 0.087 0.913 10 C -0.077 4.077 11 N -0.960 5.960 12 Si 0.981 3.019 13 H -0.286 1.286 14 H -0.295 1.295 15 H -0.266 1.266 16 H 0.049 0.951 17 H 0.094 0.906 18 H 0.046 0.954 19 H 0.123 0.877 20 H 0.039 0.961 21 H 0.119 0.881 22 H 0.033 0.967 23 H 0.114 0.886 24 H 0.008 0.992 25 H 0.013 0.987 26 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.686 6.039 6.217 9.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.040 3.960 3 C -0.181 4.181 4 C -0.165 4.165 5 C -0.188 4.188 6 C 0.063 3.937 7 N -0.340 5.340 8 C -0.353 4.353 9 H 0.105 0.895 10 C -0.269 4.269 11 N -0.609 5.609 12 Si 0.809 3.191 13 H -0.213 1.213 14 H -0.222 1.222 15 H -0.190 1.190 16 H 0.068 0.932 17 H 0.113 0.887 18 H 0.065 0.935 19 H 0.141 0.859 20 H 0.058 0.942 21 H 0.137 0.863 22 H 0.052 0.948 23 H 0.133 0.867 24 H 0.026 0.974 25 H 0.031 0.969 26 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.669 5.814 6.012 9.578 hybrid contribution 0.343 -0.972 -1.015 1.446 sum -4.327 4.842 4.997 8.194 Atomic orbital electron populations 1.21193 0.91482 1.02057 1.01769 1.23257 0.92580 0.90458 0.89747 1.24756 0.97212 0.95869 1.00301 1.24535 0.97064 0.97206 0.97702 1.24287 0.97851 0.99280 0.97379 1.21678 0.85796 0.93268 0.92954 1.45850 1.02385 1.43769 1.41966 1.19400 0.92049 1.12998 1.10820 0.89523 1.25705 0.95940 1.02706 1.02590 1.70096 1.02817 1.44367 1.43644 0.85023 0.77460 0.77855 0.78724 1.21288 1.22180 1.19048 0.93223 0.88718 0.93476 0.85881 0.94205 0.86317 0.94798 0.86738 0.97417 0.96894 0.94448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.65 9.56 71.98 0.69 -2.96 15 2 C 0.13 5.22 2.54 1.34 0.00 5.23 15 3 C -0.14 -4.96 7.85 31.09 0.24 -4.72 15 4 C -0.15 -5.65 6.33 -11.73 -0.07 -5.72 15 5 C -0.15 -5.38 7.33 29.66 0.22 -5.16 15 6 C 0.19 9.88 5.51 87.17 0.48 10.36 15 7 N -0.62 -33.19 3.45 -641.77 -2.22 -35.41 15 8 C -0.22 -13.01 10.13 84.03 0.85 -12.16 15 9 H 0.09 4.76 7.59 -2.91 -0.02 4.73 15 10 C -0.08 -4.59 5.50 84.86 0.47 -4.13 15 11 N -0.96 -60.75 11.07 21.65 0.24 -60.51 15 12 Si 0.98 47.34 29.55 68.60 2.03 49.37 15 13 H -0.29 -13.51 7.11 99.48 0.71 -12.81 15 14 H -0.30 -14.32 7.11 99.48 0.71 -13.61 15 15 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 16 H 0.05 1.72 8.14 -2.39 -0.02 1.70 15 17 H 0.09 2.39 8.14 -2.39 -0.02 2.37 15 18 H 0.05 1.67 8.14 -2.39 -0.02 1.65 15 19 H 0.12 3.18 7.94 -2.38 -0.02 3.16 15 20 H 0.04 1.54 8.14 -2.39 -0.02 1.52 15 21 H 0.12 3.84 8.14 -2.39 -0.02 3.82 15 22 H 0.03 1.39 8.10 -2.39 -0.02 1.37 15 23 H 0.11 3.12 7.93 -2.39 -0.02 3.10 15 24 H 0.01 0.45 7.83 -2.39 -0.02 0.43 15 25 H 0.01 0.75 7.82 -2.39 -0.02 0.73 15 26 H 0.25 15.13 8.31 -92.71 -0.77 14.36 15 Total: -1.00 -68.66 216.37 4.06 -64.60 By element: Atomic # 1 Polarization: 0.09 SS G_CDS: 1.14 Total: 1.22 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: 2.88 Total: -19.27 kcal Atomic # 7 Polarization: -93.94 SS G_CDS: -1.98 Total: -95.92 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.37 kcal Total: -68.66 4.06 -64.60 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654315375.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.978 kcal (2) G-P(sol) polarization free energy of solvation -68.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds