Wall clock time and date at job start Mon Mar 30 2020 01:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46997 * 2 1 4 4 C 1.50701 * 109.46711 * 239.99648 * 2 1 3 5 5 O 1.21435 * 119.99942 * 269.99606 * 4 2 1 6 6 C 1.41026 * 119.99698 * 90.00089 * 4 2 1 7 7 H 1.07999 * 120.00147 * 0.02562 * 6 4 2 8 8 C 1.40460 * 119.99960 * 179.97438 * 6 4 2 9 9 N 1.30521 * 119.99902 * 359.97438 * 8 6 4 10 10 Si 1.86798 * 120.00227 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47129 * 89.99834 * 10 8 6 12 12 H 1.48495 * 109.47366 * 209.99857 * 10 8 6 13 13 H 1.48502 * 109.46929 * 330.00048 * 10 8 6 14 14 C 1.53001 * 109.47016 * 119.99845 * 2 1 3 15 15 C 1.53000 * 117.50223 * 299.99980 * 14 2 1 16 16 C 1.52997 * 117.49889 * 231.37242 * 14 2 1 17 17 H 1.09005 * 109.47267 * 300.00032 * 1 2 3 18 18 H 1.08997 * 109.47409 * 59.99734 * 1 2 3 19 19 H 1.09007 * 109.47169 * 180.02562 * 1 2 3 20 20 H 0.96999 * 119.99891 * 179.97438 * 9 8 6 21 21 H 1.09002 * 115.55911 * 85.68670 * 14 2 1 22 22 H 1.08990 * 117.49990 * 145.01974 * 15 14 2 23 23 H 1.09004 * 117.49237 * 359.97438 * 15 14 2 24 24 H 1.08999 * 117.49685 * 0.02562 * 16 14 2 25 25 H 1.08999 * 117.52022 * 214.97106 * 16 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2305 5 8 2.2347 -1.9075 -1.2003 6 6 2.2672 0.0148 -2.4169 7 1 2.0877 1.0794 -2.4435 8 6 2.7358 -0.6473 -3.5636 9 7 2.9543 -1.9337 -3.5310 10 14 3.0478 0.3134 -5.1349 11 1 4.4503 0.8013 -5.1466 12 1 2.8208 -0.5686 -6.3078 13 1 2.1203 1.4714 -5.1995 14 6 2.0400 -0.7212 1.2493 15 6 1.6357 -0.1495 2.6097 16 6 3.0742 0.0051 2.1116 17 1 -0.3634 0.5139 0.8900 18 1 -0.3634 0.5138 -0.8899 19 1 -0.3634 -1.0277 0.0005 20 1 3.2776 -2.3910 -4.3230 21 1 2.1270 -1.8044 1.1644 22 1 1.4569 -0.8565 3.4196 23 1 1.0068 0.7408 2.6145 24 1 3.3909 0.9970 1.7892 25 1 3.8416 -0.5999 2.5944 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000021410368.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:24 Heat of formation + Delta-G solvation = -55.079068 kcal Electronic energy + Delta-G solvation = -9528.411564 eV Core-core repulsion = 7699.341815 eV Total energy + Delta-G solvation = -1829.069749 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.70661 -37.55246 -34.72609 -32.71837 -28.89894 -25.58702 -23.10473 -22.60238 -20.12164 -18.48965 -17.40650 -16.24785 -15.67904 -14.92162 -14.67144 -14.52746 -13.51808 -13.33864 -13.00311 -12.87494 -12.42152 -12.32169 -12.13910 -12.07662 -11.52905 -11.13235 -10.95840 -10.71460 -9.42715 -8.24891 -7.07594 1.35052 1.36899 1.53759 2.21401 2.22371 3.01098 3.43697 3.83810 4.09291 4.21534 4.39705 4.59890 4.76134 4.80985 4.87581 5.01519 5.13157 5.20706 5.24505 5.30772 5.39009 5.56695 5.99540 6.74415 6.87468 8.32222 8.55626 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.076275 B = 0.013254 C = 0.012948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 367.002271 B = 2112.002685 C = 2161.966131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.098 4.098 3 H 0.075 0.925 4 C 0.348 3.652 5 O -0.597 6.597 6 C -0.567 4.567 7 H 0.084 0.916 8 C 0.025 3.975 9 N -0.794 5.794 10 Si 0.993 3.007 11 H -0.259 1.259 12 H -0.269 1.269 13 H -0.248 1.248 14 C -0.159 4.159 15 C -0.154 4.154 16 C -0.182 4.182 17 H 0.081 0.919 18 H 0.052 0.948 19 H 0.032 0.968 20 H 0.280 0.720 21 H 0.072 0.928 22 H 0.104 0.896 23 H 0.109 0.891 24 H 0.096 0.904 25 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.856 6.799 4.471 8.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.118 4.118 3 H 0.093 0.907 4 C 0.247 3.753 5 O -0.490 6.490 6 C -0.598 4.598 7 H 0.102 0.898 8 C -0.194 4.194 9 N -0.423 5.423 10 Si 0.811 3.189 11 H -0.183 1.183 12 H -0.193 1.193 13 H -0.171 1.171 14 C -0.178 4.178 15 C -0.191 4.191 16 C -0.219 4.219 17 H 0.099 0.901 18 H 0.071 0.929 19 H 0.051 0.949 20 H 0.090 0.910 21 H 0.090 0.910 22 H 0.122 0.878 23 H 0.127 0.873 24 H 0.115 0.885 25 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.732 6.071 4.469 7.735 hybrid contribution 0.285 -0.011 -0.758 0.810 sum -1.447 6.060 3.711 7.252 Atomic orbital electron populations 1.21480 0.93185 1.00713 1.02010 1.21081 0.97374 0.99019 0.94295 0.90717 1.20219 0.77810 0.88319 0.88994 1.90325 1.53127 1.18842 1.86695 1.21388 1.43158 0.97342 0.97889 0.89828 1.27279 0.91990 0.95551 1.04566 1.70104 1.30018 1.11432 1.30716 0.85098 0.79953 0.78796 0.75029 1.18326 1.19305 1.17081 1.22027 1.05607 0.98291 0.91847 1.23008 0.97087 1.03325 0.95668 1.23043 0.93053 1.01880 1.03923 0.90062 0.92932 0.94874 0.90983 0.90983 0.87756 0.87300 0.88513 0.88781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.54 9.02 71.98 0.65 -3.89 15 2 C -0.10 -4.45 2.77 -11.54 -0.03 -4.48 15 3 H 0.07 3.15 7.85 -2.39 -0.02 3.13 15 4 C 0.35 20.45 5.96 26.37 0.16 20.60 15 5 O -0.60 -40.31 14.42 -3.51 -0.05 -40.36 15 6 C -0.57 -32.51 9.19 23.50 0.22 -32.29 15 7 H 0.08 4.35 7.85 -2.91 -0.02 4.32 15 8 C 0.02 1.37 5.50 85.43 0.47 1.84 15 9 N -0.79 -48.23 11.72 21.91 0.26 -47.97 15 10 Si 0.99 40.36 29.56 68.60 2.03 42.39 15 11 H -0.26 -10.01 7.11 99.48 0.71 -9.30 15 12 H -0.27 -10.42 7.11 99.48 0.71 -9.72 15 13 H -0.25 -9.40 7.11 99.48 0.71 -8.69 15 14 C -0.16 -6.60 5.00 -10.79 -0.05 -6.66 15 15 C -0.15 -4.59 9.74 30.60 0.30 -4.29 15 16 C -0.18 -6.10 10.18 30.60 0.31 -5.79 15 17 H 0.08 2.48 7.29 -2.38 -0.02 2.46 15 18 H 0.05 2.01 8.14 -2.39 -0.02 1.99 15 19 H 0.03 1.37 8.14 -2.38 -0.02 1.35 15 20 H 0.28 15.21 8.29 -92.71 -0.77 14.44 15 21 H 0.07 3.50 7.36 -2.39 -0.02 3.49 15 22 H 0.10 2.71 8.14 -2.39 -0.02 2.69 15 23 H 0.11 2.80 7.61 -2.38 -0.02 2.79 15 24 H 0.10 3.06 8.05 -2.39 -0.02 3.05 15 25 H 0.09 2.94 8.14 -2.39 -0.02 2.92 15 Total: -1.00 -71.39 221.25 5.41 -65.98 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 1.16 Total: 14.92 kcal Atomic # 6 Polarization: -36.98 SS G_CDS: 2.02 Total: -34.96 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: 0.26 Total: -47.97 kcal Atomic # 8 Polarization: -40.31 SS G_CDS: -0.05 Total: -40.36 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.39 kcal Total: -71.39 5.41 -65.98 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021410368.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.903 kcal (2) G-P(sol) polarization free energy of solvation -71.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds