Wall clock time and date at job start Mon Mar 30 2020 01:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47294 * 2 1 4 4 C 1.50694 * 109.46993 * 120.00473 * 2 1 3 5 5 O 1.21435 * 120.00258 * 94.99869 * 4 2 1 6 6 C 1.41025 * 119.99798 * 274.99760 * 4 2 1 7 7 H 1.07997 * 120.00366 * 0.02562 * 6 4 2 8 8 C 1.40467 * 119.99746 * 179.72304 * 6 4 2 9 9 N 1.30515 * 119.99953 * 0.02562 * 8 6 4 10 10 Si 1.86800 * 119.99746 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47350 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46893 * 120.00116 * 10 8 6 13 13 H 1.48496 * 109.47422 * 240.00178 * 10 8 6 14 14 C 1.53000 * 109.47263 * 240.00525 * 2 1 3 15 15 C 1.53002 * 117.50086 * 128.62268 * 14 2 1 16 16 C 1.52999 * 117.50261 * 59.99854 * 14 2 1 17 17 H 1.09007 * 109.46811 * 59.99467 * 1 2 3 18 18 H 1.08995 * 109.47127 * 179.97438 * 1 2 3 19 19 H 1.08997 * 109.47450 * 299.99811 * 1 2 3 20 20 H 0.97009 * 119.99647 * 179.97438 * 9 8 6 21 21 H 1.09005 * 115.54578 * 274.33098 * 14 2 1 22 22 H 1.08995 * 117.49580 * 359.97438 * 15 14 2 23 23 H 1.08999 * 117.49386 * 145.02031 * 15 14 2 24 24 H 1.08999 * 117.50192 * 214.98252 * 16 14 2 25 25 H 1.09006 * 117.49409 * 359.97438 * 16 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.3211 -1.8887 1.1758 6 6 2.1670 -0.0070 2.4452 7 1 1.9098 1.0408 2.4939 8 6 2.6296 -0.6707 3.5935 9 7 2.9353 -1.9382 3.5360 10 14 2.8074 0.2609 5.2028 11 1 2.3983 1.6746 5.0042 12 1 1.9416 -0.3641 6.2347 13 1 4.2229 0.2128 5.6489 14 6 2.0400 -0.7211 -1.2493 15 6 3.0742 0.0053 -2.1117 16 6 1.6358 -0.1494 -2.6096 17 1 -0.3633 0.5140 -0.8900 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3634 0.5138 0.8900 20 1 3.2552 -2.3965 4.3289 21 1 2.1267 -1.8044 -1.1643 22 1 3.3908 0.9972 -1.7892 23 1 3.8416 -0.6000 -2.5941 24 1 1.4569 -0.8564 -3.4197 25 1 1.0061 0.7404 -2.6145 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021410371.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:27 Heat of formation + Delta-G solvation = -34.793186 kcal Electronic energy + Delta-G solvation = -9528.577016 eV Core-core repulsion = 7700.386929 eV Total energy + Delta-G solvation = -1828.190087 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -37.87325 -35.68939 -32.57208 -30.97473 -26.73471 -23.88240 -21.72287 -20.73923 -18.32899 -16.38995 -15.47223 -14.52185 -14.02085 -13.22132 -12.78910 -12.61275 -11.77734 -11.49943 -11.22345 -11.19762 -10.87627 -10.49270 -10.35843 -10.21681 -9.77528 -9.57056 -9.20517 -8.86573 -7.26270 -6.15354 -4.82849 3.06604 3.16720 3.21549 4.07256 4.28836 4.48675 5.33524 5.46680 5.60865 5.69521 6.04488 6.10910 6.19982 6.31754 6.53009 6.55369 6.62362 6.83864 6.94653 7.04916 7.26703 7.32340 8.16159 8.89863 8.99121 10.42072 10.66847 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.077902 B = 0.013281 C = 0.012819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 359.339885 B = 2107.820642 C = 2183.673128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.105 4.105 3 H 0.064 0.936 4 C 0.374 3.626 5 O -0.544 6.544 6 C -0.535 4.535 7 H 0.068 0.932 8 C 0.083 3.917 9 N -0.742 5.742 10 Si 0.902 3.098 11 H -0.261 1.261 12 H -0.274 1.274 13 H -0.274 1.274 14 C -0.117 4.117 15 C -0.186 4.186 16 C -0.193 4.193 17 H 0.040 0.960 18 H 0.049 0.951 19 H 0.054 0.946 20 H 0.271 0.729 21 H 0.110 0.890 22 H 0.088 0.912 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.843 4.597 -4.176 6.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.125 4.125 3 H 0.082 0.918 4 C 0.268 3.732 5 O -0.433 6.433 6 C -0.567 4.567 7 H 0.086 0.914 8 C -0.140 4.140 9 N -0.371 5.371 10 Si 0.727 3.273 11 H -0.185 1.185 12 H -0.200 1.200 13 H -0.199 1.199 14 C -0.136 4.136 15 C -0.223 4.223 16 C -0.230 4.230 17 H 0.059 0.941 18 H 0.068 0.932 19 H 0.073 0.927 20 H 0.082 0.918 21 H 0.128 0.872 22 H 0.106 0.894 23 H 0.103 0.897 24 H 0.102 0.898 25 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.657 3.863 -4.169 5.920 hybrid contribution 0.103 0.659 0.755 1.008 sum -1.554 4.523 -3.414 5.876 Atomic orbital electron populations 1.21507 0.95100 1.01239 1.00170 1.21279 0.95785 0.99400 0.96037 0.91779 1.19374 0.78674 0.88266 0.86908 1.90369 1.49046 1.17669 1.86198 1.20849 1.42443 0.97977 0.95465 0.91413 1.26020 0.93048 0.94464 1.00444 1.69971 1.28526 1.09362 1.29271 0.86396 0.78536 0.80805 0.81611 1.18494 1.19953 1.19944 1.22260 1.00982 1.00219 0.90096 1.22906 0.92056 1.01971 1.05330 1.22896 0.98160 1.03169 0.98809 0.94102 0.93168 0.92679 0.91811 0.87226 0.89377 0.89690 0.89803 0.89494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.45 9.02 37.16 0.33 -2.11 15 2 C -0.11 -2.40 2.75 -91.78 -0.25 -2.65 15 3 H 0.06 1.39 7.88 -51.93 -0.41 0.99 15 4 C 0.37 10.63 6.01 -33.26 -0.20 10.43 15 5 O -0.54 -17.47 14.32 5.42 0.08 -17.39 15 6 C -0.54 -15.16 9.21 -37.69 -0.35 -15.51 15 7 H 0.07 1.78 7.85 -52.49 -0.41 1.37 15 8 C 0.08 2.29 5.50 -17.27 -0.10 2.20 15 9 N -0.74 -21.92 11.72 55.57 0.65 -21.27 15 10 Si 0.90 19.81 29.56 -169.99 -5.03 14.78 15 11 H -0.26 -5.56 7.11 56.52 0.40 -5.16 15 12 H -0.27 -5.87 7.11 56.52 0.40 -5.47 15 13 H -0.27 -5.88 7.11 56.52 0.40 -5.48 15 14 C -0.12 -2.45 4.96 -90.62 -0.45 -2.90 15 15 C -0.19 -3.30 10.18 -26.73 -0.27 -3.57 15 16 C -0.19 -3.20 9.74 -26.73 -0.26 -3.46 15 17 H 0.04 0.68 7.29 -51.93 -0.38 0.31 15 18 H 0.05 1.03 8.14 -51.93 -0.42 0.61 15 19 H 0.05 1.08 8.14 -51.93 -0.42 0.66 15 20 H 0.27 7.16 8.29 -40.82 -0.34 6.83 15 21 H 0.11 2.55 7.33 -51.93 -0.38 2.17 15 22 H 0.09 1.51 8.05 -51.93 -0.42 1.09 15 23 H 0.08 1.40 8.14 -51.93 -0.42 0.98 15 24 H 0.08 1.25 8.14 -51.93 -0.42 0.82 15 25 H 0.09 1.34 7.61 -51.93 -0.39 0.94 15 LS Contribution 221.16 15.07 3.33 3.33 Total: -1.00 -31.75 221.16 -5.72 -37.47 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -3.22 Total: 0.64 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: -1.54 Total: -17.58 kcal Atomic # 7 Polarization: -21.92 SS G_CDS: 0.65 Total: -21.27 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: 0.08 Total: -17.39 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.03 Total: 14.78 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -31.75 -5.72 -37.47 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021410371.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.681 kcal (2) G-P(sol) polarization free energy of solvation -31.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds