Wall clock time and date at job start Mon Mar 30 2020 01:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47294 * 2 1 4 4 C 1.50694 * 109.46993 * 120.00473 * 2 1 3 5 5 O 1.21435 * 120.00258 * 94.99869 * 4 2 1 6 6 C 1.41025 * 119.99798 * 274.99760 * 4 2 1 7 7 H 1.07997 * 120.00366 * 0.02562 * 6 4 2 8 8 C 1.40467 * 119.99746 * 179.72304 * 6 4 2 9 9 N 1.30515 * 119.99953 * 0.02562 * 8 6 4 10 10 Si 1.86800 * 119.99746 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47350 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46893 * 120.00116 * 10 8 6 13 13 H 1.48496 * 109.47422 * 240.00178 * 10 8 6 14 14 C 1.53000 * 109.47263 * 240.00525 * 2 1 3 15 15 C 1.53002 * 117.50086 * 128.62268 * 14 2 1 16 16 C 1.52999 * 117.50261 * 59.99854 * 14 2 1 17 17 H 1.09007 * 109.46811 * 59.99467 * 1 2 3 18 18 H 1.08995 * 109.47127 * 179.97438 * 1 2 3 19 19 H 1.08997 * 109.47450 * 299.99811 * 1 2 3 20 20 H 0.97009 * 119.99647 * 179.97438 * 9 8 6 21 21 H 1.09005 * 115.54578 * 274.33098 * 14 2 1 22 22 H 1.08995 * 117.49580 * 359.97438 * 15 14 2 23 23 H 1.08999 * 117.49386 * 145.02031 * 15 14 2 24 24 H 1.08999 * 117.50192 * 214.98252 * 16 14 2 25 25 H 1.09006 * 117.49409 * 359.97438 * 16 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.3211 -1.8887 1.1758 6 6 2.1670 -0.0070 2.4452 7 1 1.9098 1.0408 2.4939 8 6 2.6296 -0.6707 3.5935 9 7 2.9353 -1.9382 3.5360 10 14 2.8074 0.2609 5.2028 11 1 2.3983 1.6746 5.0042 12 1 1.9416 -0.3641 6.2347 13 1 4.2229 0.2128 5.6489 14 6 2.0400 -0.7211 -1.2493 15 6 3.0742 0.0053 -2.1117 16 6 1.6358 -0.1494 -2.6096 17 1 -0.3633 0.5140 -0.8900 18 1 -0.3633 -1.0276 -0.0005 19 1 -0.3634 0.5138 0.8900 20 1 3.2552 -2.3965 4.3289 21 1 2.1267 -1.8044 -1.1643 22 1 3.3908 0.9972 -1.7892 23 1 3.8416 -0.6000 -2.5941 24 1 1.4569 -0.8564 -3.4197 25 1 1.0061 0.7404 -2.6145 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000021410371.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:27 Heat of formation + Delta-G solvation = -54.947485 kcal Electronic energy + Delta-G solvation = -9529.450972 eV Core-core repulsion = 7700.386929 eV Total energy + Delta-G solvation = -1829.064043 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.70773 -37.54584 -34.72213 -32.74148 -28.86761 -25.58385 -23.10538 -22.60753 -20.12388 -18.47127 -17.41106 -16.25059 -15.67849 -14.90381 -14.66766 -14.55689 -13.51259 -13.32681 -13.00543 -12.89010 -12.41946 -12.31069 -12.14141 -12.04824 -11.51840 -11.12504 -10.97170 -10.71019 -9.42623 -8.24947 -7.07186 1.33580 1.37060 1.55219 2.21695 2.22301 3.01427 3.43939 3.83800 4.09460 4.21667 4.39982 4.60220 4.76154 4.81434 4.88238 5.01590 5.13666 5.21241 5.24831 5.30724 5.39877 5.57384 6.00175 6.74772 6.87686 8.32331 8.55764 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.077902 B = 0.013281 C = 0.012819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 359.339885 B = 2107.820642 C = 2183.673128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.099 4.099 3 H 0.075 0.925 4 C 0.348 3.652 5 O -0.596 6.596 6 C -0.566 4.566 7 H 0.083 0.917 8 C 0.024 3.976 9 N -0.794 5.794 10 Si 0.993 3.007 11 H -0.246 1.246 12 H -0.264 1.264 13 H -0.265 1.265 14 C -0.159 4.159 15 C -0.183 4.183 16 C -0.154 4.154 17 H 0.080 0.920 18 H 0.032 0.968 19 H 0.053 0.947 20 H 0.280 0.720 21 H 0.072 0.928 22 H 0.096 0.904 23 H 0.093 0.907 24 H 0.104 0.896 25 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.280 6.708 -4.353 8.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.118 4.118 3 H 0.093 0.907 4 C 0.246 3.754 5 O -0.489 6.489 6 C -0.597 4.597 7 H 0.102 0.898 8 C -0.194 4.194 9 N -0.423 5.423 10 Si 0.811 3.189 11 H -0.169 1.169 12 H -0.189 1.189 13 H -0.190 1.190 14 C -0.177 4.177 15 C -0.220 4.220 16 C -0.191 4.191 17 H 0.099 0.901 18 H 0.051 0.949 19 H 0.072 0.928 20 H 0.090 0.910 21 H 0.091 0.909 22 H 0.114 0.886 23 H 0.112 0.888 24 H 0.122 0.878 25 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.105 5.994 -4.367 7.710 hybrid contribution 0.250 -0.029 0.773 0.813 sum -1.855 5.965 -3.594 7.207 Atomic orbital electron populations 1.21477 0.93093 1.00725 1.02050 1.21084 0.97450 0.99010 0.94249 0.90720 1.20233 0.77856 0.87956 0.89360 1.90325 1.51273 1.19829 1.87503 1.21395 1.42887 0.98926 0.96458 0.89831 1.27278 0.91715 0.95330 1.05078 1.70111 1.29256 1.11734 1.31187 0.85052 0.78962 0.79500 0.75353 1.16921 1.18907 1.18960 1.22027 1.05519 0.98355 0.91836 1.23035 0.93069 1.01850 1.03998 1.23007 0.97048 1.03334 0.95706 0.90112 0.94865 0.92811 0.90998 0.90939 0.88565 0.88828 0.87767 0.87299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.50 9.02 71.98 0.65 -3.85 15 2 C -0.10 -4.46 2.75 -11.54 -0.03 -4.49 15 3 H 0.07 3.16 7.88 -2.39 -0.02 3.14 15 4 C 0.35 20.39 6.01 26.37 0.16 20.55 15 5 O -0.60 -40.24 14.32 -3.51 -0.05 -40.29 15 6 C -0.57 -32.39 9.21 23.50 0.22 -32.18 15 7 H 0.08 4.35 7.85 -2.91 -0.02 4.33 15 8 C 0.02 1.35 5.50 85.43 0.47 1.83 15 9 N -0.79 -48.19 11.72 21.91 0.26 -47.93 15 10 Si 0.99 40.36 29.56 68.60 2.03 42.39 15 11 H -0.25 -9.32 7.11 99.48 0.71 -8.62 15 12 H -0.26 -10.26 7.11 99.48 0.71 -9.55 15 13 H -0.26 -10.30 7.11 99.48 0.71 -9.60 15 14 C -0.16 -6.60 4.96 -10.79 -0.05 -6.65 15 15 C -0.18 -6.15 10.18 30.59 0.31 -5.84 15 16 C -0.15 -4.60 9.74 30.59 0.30 -4.30 15 17 H 0.08 2.45 7.29 -2.38 -0.02 2.44 15 18 H 0.03 1.36 8.14 -2.39 -0.02 1.34 15 19 H 0.05 2.05 8.14 -2.39 -0.02 2.03 15 20 H 0.28 15.15 8.29 -92.70 -0.77 14.38 15 21 H 0.07 3.53 7.33 -2.38 -0.02 3.51 15 22 H 0.10 3.07 8.05 -2.39 -0.02 3.05 15 23 H 0.09 2.95 8.14 -2.39 -0.02 2.93 15 24 H 0.10 2.71 8.14 -2.39 -0.02 2.69 15 25 H 0.11 2.81 7.61 -2.38 -0.02 2.79 15 Total: -1.00 -71.33 221.16 5.41 -65.91 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 1.16 Total: 14.85 kcal Atomic # 6 Polarization: -36.95 SS G_CDS: 2.02 Total: -34.93 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: 0.26 Total: -47.93 kcal Atomic # 8 Polarization: -40.24 SS G_CDS: -0.05 Total: -40.29 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.39 kcal Total: -71.33 5.41 -65.91 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021410371.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.967 kcal (2) G-P(sol) polarization free energy of solvation -71.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds