Wall clock time and date at job start Mon Mar 30 2020 02:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47465 * 2 1 4 4 C 1.53006 * 109.47022 * 119.99836 * 2 1 3 5 5 H 1.09002 * 109.47223 * 55.89442 * 4 2 1 6 6 C 1.50697 * 109.47479 * 175.89970 * 4 2 1 7 7 H 1.07996 * 119.99989 * 115.64897 * 6 4 2 8 8 C 1.37876 * 119.99836 * 295.65565 * 6 4 2 9 9 N 1.31512 * 120.00031 * 353.00206 * 8 6 4 10 10 Si 1.86801 * 119.99944 * 173.00752 * 8 6 4 11 11 H 1.48502 * 109.47249 * 89.99830 * 10 8 6 12 12 H 1.48505 * 109.46865 * 209.99874 * 10 8 6 13 13 H 1.48497 * 109.47297 * 329.99482 * 10 8 6 14 14 C 1.53008 * 109.46996 * 295.90187 * 4 2 1 15 15 C 1.52995 * 117.49915 * 135.92370 * 14 4 2 16 16 C 1.52995 * 117.49821 * 67.26060 * 14 4 2 17 17 H 1.09004 * 109.47395 * 312.83452 * 1 2 3 18 18 H 1.08999 * 109.47497 * 72.83359 * 1 2 3 19 19 H 1.09000 * 109.47763 * 192.83428 * 1 2 3 20 20 H 1.09004 * 109.47238 * 239.99449 * 2 1 3 21 21 H 1.09002 * 109.47229 * 181.35832 * 3 2 1 22 22 H 1.09006 * 109.46740 * 301.35597 * 3 2 1 23 23 H 1.08996 * 109.47358 * 61.35245 * 3 2 1 24 24 H 0.97000 * 120.00096 * 180.02562 * 9 8 6 25 25 H 1.09004 * 115.54382 * 281.59158 * 14 4 2 26 26 H 1.08996 * 117.50080 * 359.97438 * 15 14 4 27 27 H 1.09005 * 117.49525 * 145.01824 * 15 14 4 28 28 H 1.09007 * 117.49774 * 214.97646 * 16 14 4 29 29 H 1.08996 * 117.50416 * 0.02562 * 16 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6178 -1.7255 1.2869 6 6 3.5435 -0.8099 1.1997 7 1 4.1394 -0.2973 1.9403 8 6 4.1583 -1.5453 0.2087 9 7 3.4363 -2.2799 -0.6090 10 14 6.0169 -1.4984 0.0275 11 1 6.6223 -2.5721 0.8556 12 1 6.3808 -1.7072 -1.3970 13 1 6.5252 -0.1784 0.4798 14 6 1.6158 0.0572 2.4964 15 6 1.0596 -0.7449 3.6746 16 6 0.1216 0.1120 2.8207 17 1 -0.3634 0.6987 0.7536 18 1 -0.3634 0.3033 -0.9818 19 1 -0.3634 -1.0020 0.2283 20 1 1.8933 -0.5139 -0.8900 21 1 3.1298 1.4425 -0.0244 22 1 1.6569 1.9632 -0.8776 23 1 1.6967 1.9492 0.9018 24 1 3.8689 -2.7976 -1.3060 25 1 2.2134 0.9395 2.7256 26 1 0.9954 -1.8270 3.5612 27 1 1.2908 -0.3899 4.6790 28 1 -0.2639 1.0304 3.2637 29 1 -0.5593 -0.4067 2.1459 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000023811665.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:45 Heat of formation + Delta-G solvation = -10.566046 kcal Electronic energy + Delta-G solvation = -10098.229862 eV Core-core repulsion = 8406.923438 eV Total energy + Delta-G solvation = -1691.306425 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.38612 -35.50960 -33.92081 -29.57503 -27.72471 -25.25380 -23.07807 -22.02826 -19.87426 -18.30960 -16.66542 -16.03275 -15.54913 -14.59181 -14.46748 -14.02295 -13.55521 -13.02950 -12.86044 -12.79809 -12.45422 -12.08536 -11.91373 -11.70739 -11.59783 -11.20852 -10.94738 -10.42643 -10.34637 -10.17086 -8.06420 -6.13135 1.39923 1.41763 1.51269 2.45630 3.18458 3.28931 4.14111 4.34098 4.41619 4.58854 4.63011 4.65073 4.87492 4.95435 4.99914 5.17270 5.18160 5.27027 5.34139 5.44319 5.45887 5.69760 5.75020 5.85282 6.06013 6.19781 6.48176 6.97743 7.51881 9.01257 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.051786 B = 0.017494 C = 0.015473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.558430 B = 1600.121197 C = 1809.112242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.086 4.086 3 C -0.119 4.119 4 C 0.081 3.919 5 H -0.010 1.010 6 C -0.515 4.515 7 H 0.048 0.952 8 C 0.013 3.987 9 N -0.920 5.920 10 Si 0.942 3.058 11 H -0.279 1.279 12 H -0.285 1.285 13 H -0.267 1.267 14 C -0.136 4.136 15 C -0.191 4.191 16 C -0.177 4.177 17 H 0.074 0.926 18 H 0.043 0.957 19 H 0.033 0.967 20 H 0.041 0.959 21 H 0.033 0.967 22 H 0.043 0.957 23 H 0.055 0.945 24 H 0.258 0.742 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.100 0.900 28 H 0.107 0.893 29 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.164 5.329 3.369 7.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.105 4.105 3 C -0.176 4.176 4 C 0.063 3.937 5 H 0.008 0.992 6 C -0.553 4.553 7 H 0.066 0.934 8 C -0.185 4.185 9 N -0.561 5.561 10 Si 0.768 3.232 11 H -0.205 1.205 12 H -0.211 1.211 13 H -0.192 1.192 14 C -0.155 4.155 15 C -0.228 4.228 16 C -0.214 4.214 17 H 0.092 0.908 18 H 0.062 0.938 19 H 0.052 0.948 20 H 0.060 0.940 21 H 0.053 0.947 22 H 0.062 0.938 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.106 0.894 26 H 0.090 0.910 27 H 0.118 0.882 28 H 0.125 0.875 29 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.145 5.216 3.222 7.401 hybrid contribution 1.183 -0.484 -0.343 1.323 sum -2.962 4.732 2.880 6.282 Atomic orbital electron populations 1.22053 0.96207 1.00368 1.00888 1.20949 0.93944 0.95814 0.99831 1.21588 0.99993 0.95929 1.00114 1.18233 0.93738 0.91922 0.89852 0.99230 1.21454 0.93030 1.29479 1.11365 0.93367 1.25645 1.01683 0.95005 0.96133 1.70076 1.36553 1.29539 1.19895 0.85798 0.81729 0.78548 0.77084 1.20497 1.21089 1.19196 1.22331 0.95382 1.00667 0.97088 1.22945 1.06132 0.97618 0.96102 1.23220 0.93187 1.02041 1.02955 0.90766 0.93773 0.94786 0.94003 0.94743 0.93785 0.92581 0.93332 0.89421 0.90964 0.88183 0.87509 0.88666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.26 7.61 71.98 0.55 -4.71 15 2 C -0.09 -3.99 2.58 -10.80 -0.03 -4.02 15 3 C -0.12 -4.87 8.65 71.98 0.62 -4.25 15 4 C 0.08 4.05 1.61 -11.54 -0.02 4.03 15 5 H -0.01 -0.60 7.91 -2.39 -0.02 -0.62 15 6 C -0.52 -28.52 7.46 25.60 0.19 -28.33 15 7 H 0.05 2.65 7.76 -2.91 -0.02 2.63 15 8 C 0.01 0.75 5.21 84.65 0.44 1.19 15 9 N -0.92 -54.50 11.96 21.45 0.26 -54.25 15 10 Si 0.94 44.38 29.54 68.60 2.03 46.41 15 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 15 12 H -0.29 -13.24 7.11 99.48 0.71 -12.54 15 13 H -0.27 -12.18 7.11 99.48 0.71 -11.47 15 14 C -0.14 -5.59 3.72 -10.79 -0.04 -5.63 15 15 C -0.19 -6.89 10.18 30.62 0.31 -6.58 15 16 C -0.18 -5.86 8.17 30.62 0.25 -5.61 15 17 H 0.07 2.46 5.61 -2.38 -0.01 2.45 15 18 H 0.04 1.52 8.14 -2.39 -0.02 1.50 15 19 H 0.03 1.32 7.56 -2.39 -0.02 1.31 15 20 H 0.04 2.26 6.62 -2.38 -0.02 2.25 15 21 H 0.03 1.53 7.39 -2.39 -0.02 1.51 15 22 H 0.04 1.58 8.14 -2.38 -0.02 1.56 15 23 H 0.06 2.06 6.77 -2.39 -0.02 2.04 15 24 H 0.26 14.59 8.31 -92.71 -0.77 13.82 15 25 H 0.09 3.56 7.69 -2.39 -0.02 3.54 15 26 H 0.07 2.79 8.10 -2.39 -0.02 2.77 15 27 H 0.10 3.10 8.14 -2.38 -0.02 3.08 15 28 H 0.11 2.90 8.14 -2.38 -0.02 2.89 15 29 H 0.10 3.17 5.66 -2.39 -0.01 3.16 15 Total: -1.00 -59.71 229.95 5.66 -54.05 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 1.10 Total: 7.69 kcal Atomic # 6 Polarization: -56.18 SS G_CDS: 2.28 Total: -53.90 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: 0.26 Total: -54.25 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -59.71 5.66 -54.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000023811665.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.483 kcal (2) G-P(sol) polarization free energy of solvation -59.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds