Wall clock time and date at job start Mon Mar 30 2020 01:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99919 * 2 1 4 4 H 1.48506 * 109.47088 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47245 * 299.99833 * 3 2 1 6 6 H 1.48500 * 109.47361 * 59.99968 * 3 2 1 7 7 C 1.37878 * 120.00247 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00588 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99403 * 0.02562 * 7 2 1 10 10 H 1.08998 * 115.59559 * 60.90944 * 9 7 2 11 11 C 1.53559 * 117.51905 * 206.73537 * 9 7 2 12 12 H 1.09001 * 116.65214 * 214.99010 * 11 9 7 13 13 O 1.42629 * 116.11742 * 356.36323 * 11 9 7 14 14 C 1.42727 * 115.00201 * 90.24606 * 13 11 9 15 15 C 1.53316 * 108.91829 * 305.51936 * 14 13 11 16 16 C 1.52632 * 108.83249 * 71.32216 * 15 14 13 17 17 C 1.52416 * 59.75898 * 107.41969 * 11 9 7 18 18 H 1.08997 * 116.64288 * 107.03017 * 17 11 9 19 19 H 0.97002 * 119.99740 * 359.97438 * 1 2 3 20 20 H 1.09003 * 109.57800 * 65.38203 * 14 13 11 21 21 H 1.09001 * 109.57732 * 185.65382 * 14 13 11 22 22 H 1.09006 * 109.67758 * 191.79941 * 15 14 13 23 23 H 1.08992 * 109.68150 * 312.34913 * 15 14 13 24 24 H 1.08998 * 110.51068 * 187.67167 * 16 15 14 25 25 H 1.08994 * 107.87156 * 68.05902 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6020 -2.6681 -0.8587 11 6 1.9492 -3.7216 0.6137 12 1 1.7503 -4.6850 0.1441 13 8 3.2898 -3.5219 1.0578 14 6 3.4194 -3.1059 2.4170 15 6 2.5708 -1.8478 2.6348 16 6 1.0953 -2.2370 2.6028 17 6 0.7946 -3.0491 1.3470 18 1 -0.1544 -3.5849 1.3601 19 1 -0.4850 0.8401 0.0004 20 1 3.0709 -3.9004 3.0769 21 1 4.4644 -2.8837 2.6329 22 1 2.8188 -1.3998 3.5972 23 1 2.7634 -1.1321 1.8357 24 1 0.4652 -1.3478 2.6194 25 1 0.8901 -2.8436 3.4848 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000024448802.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:20 Heat of formation + Delta-G solvation = -39.430932 kcal Electronic energy + Delta-G solvation = -10085.371368 eV Core-core repulsion = 8256.980173 eV Total energy + Delta-G solvation = -1828.391195 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.68783 -35.83103 -33.93760 -33.30740 -28.20757 -26.52606 -24.04929 -21.88231 -19.71780 -18.43004 -17.13434 -16.78576 -16.19297 -15.55677 -14.90315 -14.47691 -14.02505 -13.54822 -13.03686 -12.86855 -12.61671 -12.29345 -11.72305 -11.48983 -11.23610 -10.97092 -10.55603 -10.15561 -9.60303 -8.12354 -6.10960 1.38410 1.42025 1.52700 2.42508 2.98712 3.18760 3.36188 4.14529 4.31148 4.32877 4.42922 4.47192 4.71217 4.72623 4.97213 5.09236 5.25586 5.41054 5.48171 5.58519 5.79302 5.95154 6.34921 6.63329 6.86600 7.45424 8.99463 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.056373 B = 0.021024 C = 0.019342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.568168 B = 1331.467674 C = 1447.245979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.022 3.978 3 Si 0.941 3.059 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.278 1.278 7 C -0.476 4.476 8 H 0.056 0.944 9 C -0.024 4.024 10 H 0.041 0.959 11 C 0.005 3.995 12 H 0.126 0.874 13 O -0.370 6.370 14 C 0.068 3.932 15 C -0.181 4.181 16 C -0.057 4.057 17 C -0.172 4.172 18 H 0.087 0.913 19 H 0.259 0.741 20 H 0.054 0.946 21 H 0.101 0.899 22 H 0.073 0.927 23 H 0.091 0.909 24 H 0.041 0.959 25 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.735 -3.423 5.236 7.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.177 4.177 3 Si 0.767 3.233 4 H -0.189 1.189 5 H -0.208 1.208 6 H -0.204 1.204 7 C -0.513 4.513 8 H 0.074 0.926 9 C -0.043 4.043 10 H 0.059 0.941 11 C -0.053 4.053 12 H 0.143 0.857 13 O -0.289 6.289 14 C -0.008 4.008 15 C -0.218 4.218 16 C -0.095 4.095 17 C -0.191 4.191 18 H 0.105 0.895 19 H 0.068 0.932 20 H 0.072 0.928 21 H 0.119 0.881 22 H 0.091 0.909 23 H 0.109 0.891 24 H 0.059 0.941 25 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.751 -3.332 5.118 7.167 hybrid contribution -0.293 0.982 -0.039 1.026 sum 3.458 -2.350 5.079 6.578 Atomic orbital electron populations 1.70099 1.07212 1.26989 1.51348 1.25601 0.95429 1.01639 0.95041 0.85751 0.79469 0.80380 0.77712 1.18928 1.20778 1.20402 1.20459 0.92308 0.89805 1.48761 0.92593 1.20368 0.98174 0.93571 0.92170 0.94137 1.23079 0.81270 0.96697 1.04228 0.85700 1.87581 1.24405 1.88052 1.28821 1.22595 1.00490 0.95123 0.82626 1.22606 0.95491 1.00378 1.03295 1.20401 0.96602 0.97945 0.94538 1.22482 0.96122 1.03306 0.97222 0.89467 0.93169 0.92819 0.88069 0.90862 0.89130 0.94060 0.92246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.18 13.29 21.45 0.28 -52.89 15 2 C 0.02 1.20 5.37 84.65 0.45 1.66 15 3 Si 0.94 43.37 29.54 68.60 2.03 45.40 15 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 15 5 H -0.28 -12.84 7.11 99.48 0.71 -12.14 15 6 H -0.28 -12.50 7.11 99.48 0.71 -11.80 15 7 C -0.48 -26.16 5.26 25.60 0.13 -26.02 15 8 H 0.06 3.15 7.02 -2.91 -0.02 3.13 15 9 C -0.02 -1.25 5.48 -11.54 -0.06 -1.32 15 10 H 0.04 2.24 8.14 -2.39 -0.02 2.22 15 11 C 0.00 0.22 7.04 30.59 0.22 0.43 15 12 H 0.13 4.79 8.14 -2.39 -0.02 4.77 15 13 O -0.37 -16.12 10.02 -148.98 -1.49 -17.61 15 14 C 0.07 2.45 6.85 72.09 0.49 2.95 15 15 C -0.18 -7.25 5.71 30.58 0.17 -7.08 15 16 C -0.06 -2.43 5.68 30.32 0.17 -2.26 15 17 C -0.17 -7.77 6.17 -11.33 -0.07 -7.84 15 18 H 0.09 3.70 8.14 -2.39 -0.02 3.68 15 19 H 0.26 14.31 8.31 -92.71 -0.77 13.54 15 20 H 0.05 1.72 8.09 -2.39 -0.02 1.70 15 21 H 0.10 3.13 8.14 -2.39 -0.02 3.11 15 22 H 0.07 2.49 8.14 -2.38 -0.02 2.47 15 23 H 0.09 4.33 4.40 -2.39 -0.01 4.32 15 24 H 0.04 1.96 8.14 -2.39 -0.02 1.94 15 25 H 0.06 2.13 8.14 -2.39 -0.02 2.11 15 Total: -1.00 -60.19 206.54 3.50 -56.70 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: 1.16 Total: 7.89 kcal Atomic # 6 Polarization: -41.00 SS G_CDS: 1.51 Total: -39.48 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: 0.28 Total: -52.89 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -1.49 Total: -17.61 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -60.19 3.50 -56.70 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024448802.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.264 kcal (2) G-P(sol) polarization free energy of solvation -60.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds