Wall clock time and date at job start Mon Mar 30 2020 01:41:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86795 * 119.99919 * 2 1
4 4 H 1.48506 * 109.47088 * 180.02562 * 3 2 1
5 5 H 1.48502 * 109.47245 * 299.99833 * 3 2 1
6 6 H 1.48500 * 109.47361 * 59.99968 * 3 2 1
7 7 C 1.37878 * 120.00247 * 179.97438 * 2 1 3
8 8 H 1.07993 * 120.00588 * 179.97438 * 7 2 1
9 9 C 1.50706 * 119.99403 * 0.02562 * 7 2 1
10 10 H 1.08998 * 115.59559 * 60.90944 * 9 7 2
11 11 C 1.53559 * 117.51905 * 206.73537 * 9 7 2
12 12 H 1.09001 * 116.65214 * 214.99010 * 11 9 7
13 13 O 1.42629 * 116.11742 * 356.36323 * 11 9 7
14 14 C 1.42727 * 115.00201 * 90.24606 * 13 11 9
15 15 C 1.53316 * 108.91829 * 305.51936 * 14 13 11
16 16 C 1.52632 * 108.83249 * 71.32216 * 15 14 13
17 17 C 1.52416 * 59.75898 * 107.41969 * 11 9 7
18 18 H 1.08997 * 116.64288 * 107.03017 * 17 11 9
19 19 H 0.97002 * 119.99740 * 359.97438 * 1 2 3
20 20 H 1.09003 * 109.57800 * 65.38203 * 14 13 11
21 21 H 1.09001 * 109.57732 * 185.65382 * 14 13 11
22 22 H 1.09006 * 109.67758 * 191.79941 * 15 14 13
23 23 H 1.08992 * 109.68150 * 312.34913 * 15 14 13
24 24 H 1.08998 * 110.51068 * 187.67167 * 16 15 14
25 25 H 1.08994 * 107.87156 * 68.05902 * 16 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.7092 1.3464 -0.0006
5 1 1.8904 2.3964 -1.2125
6 1 1.8904 2.3965 1.2125
7 6 2.0046 -1.1940 0.0005
8 1 3.0845 -1.1941 0.0001
9 6 1.2510 -2.4991 0.0005
10 1 0.6020 -2.6681 -0.8587
11 6 1.9492 -3.7216 0.6137
12 1 1.7503 -4.6850 0.1441
13 8 3.2898 -3.5219 1.0578
14 6 3.4194 -3.1059 2.4170
15 6 2.5708 -1.8478 2.6348
16 6 1.0953 -2.2370 2.6028
17 6 0.7946 -3.0491 1.3470
18 1 -0.1544 -3.5849 1.3601
19 1 -0.4850 0.8401 0.0004
20 1 3.0709 -3.9004 3.0769
21 1 4.4644 -2.8837 2.6329
22 1 2.8188 -1.3998 3.5972
23 1 2.7634 -1.1321 1.8357
24 1 0.4652 -1.3478 2.6194
25 1 0.8901 -2.8436 3.4848
RHF calculation, no. of doubly occupied orbitals= 31
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000024448802.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:41:20
Heat of formation + Delta-G solvation = -39.430932 kcal
Electronic energy + Delta-G solvation = -10085.371368 eV
Core-core repulsion = 8256.980173 eV
Total energy + Delta-G solvation = -1828.391195 eV
No. of doubly occupied orbitals = 31
Molecular weight
(most abundant/longest-lived isotopes) = 168.089 amu
Computer time = 0.10 seconds
Orbital eigenvalues (eV)
-40.68783 -35.83103 -33.93760 -33.30740 -28.20757 -26.52606 -24.04929 -21.88231
-19.71780 -18.43004 -17.13434 -16.78576 -16.19297 -15.55677 -14.90315 -14.47691
-14.02505 -13.54822 -13.03686 -12.86855 -12.61671 -12.29345 -11.72305 -11.48983
-11.23610 -10.97092 -10.55603 -10.15561 -9.60303 -8.12354 -6.10960 1.38410
1.42025 1.52700 2.42508 2.98712 3.18760 3.36188 4.14529 4.31148
4.32877 4.42922 4.47192 4.71217 4.72623 4.97213 5.09236 5.25586
5.41054 5.48171 5.58519 5.79302 5.95154 6.34921 6.63329 6.86600
7.45424 8.99463
Molecular weight = 168.09amu
Principal moments of inertia in cm(-1)
A = 0.056373 B = 0.021024 C = 0.019342
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 496.568168 B = 1331.467674 C = 1447.245979
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.917 5.917
2 C 0.022 3.978
3 Si 0.941 3.059
4 H -0.265 1.265
5 H -0.282 1.282
6 H -0.278 1.278
7 C -0.476 4.476
8 H 0.056 0.944
9 C -0.024 4.024
10 H 0.041 0.959
11 C 0.005 3.995
12 H 0.126 0.874
13 O -0.370 6.370
14 C 0.068 3.932
15 C -0.181 4.181
16 C -0.057 4.057
17 C -0.172 4.172
18 H 0.087 0.913
19 H 0.259 0.741
20 H 0.054 0.946
21 H 0.101 0.899
22 H 0.073 0.927
23 H 0.091 0.909
24 H 0.041 0.959
25 H 0.059 0.941
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.735 -3.423 5.236 7.286
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.556 5.556
2 C -0.177 4.177
3 Si 0.767 3.233
4 H -0.189 1.189
5 H -0.208 1.208
6 H -0.204 1.204
7 C -0.513 4.513
8 H 0.074 0.926
9 C -0.043 4.043
10 H 0.059 0.941
11 C -0.053 4.053
12 H 0.143 0.857
13 O -0.289 6.289
14 C -0.008 4.008
15 C -0.218 4.218
16 C -0.095 4.095
17 C -0.191 4.191
18 H 0.105 0.895
19 H 0.068 0.932
20 H 0.072 0.928
21 H 0.119 0.881
22 H 0.091 0.909
23 H 0.109 0.891
24 H 0.059 0.941
25 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges 3.751 -3.332 5.118 7.167
hybrid contribution -0.293 0.982 -0.039 1.026
sum 3.458 -2.350 5.079 6.578
Atomic orbital electron populations
1.70099 1.07212 1.26989 1.51348 1.25601 0.95429 1.01639 0.95041
0.85751 0.79469 0.80380 0.77712 1.18928 1.20778 1.20402 1.20459
0.92308 0.89805 1.48761 0.92593 1.20368 0.98174 0.93571 0.92170
0.94137 1.23079 0.81270 0.96697 1.04228 0.85700 1.87581 1.24405
1.88052 1.28821 1.22595 1.00490 0.95123 0.82626 1.22606 0.95491
1.00378 1.03295 1.20401 0.96602 0.97945 0.94538 1.22482 0.96122
1.03306 0.97222 0.89467 0.93169 0.92819 0.88069 0.90862 0.89130
0.94060 0.92246
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -53.18 13.29 21.45 0.28 -52.89 15
2 C 0.02 1.20 5.37 84.65 0.45 1.66 15
3 Si 0.94 43.37 29.54 68.60 2.03 45.40 15
4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 15
5 H -0.28 -12.84 7.11 99.48 0.71 -12.14 15
6 H -0.28 -12.50 7.11 99.48 0.71 -11.80 15
7 C -0.48 -26.16 5.26 25.60 0.13 -26.02 15
8 H 0.06 3.15 7.02 -2.91 -0.02 3.13 15
9 C -0.02 -1.25 5.48 -11.54 -0.06 -1.32 15
10 H 0.04 2.24 8.14 -2.39 -0.02 2.22 15
11 C 0.00 0.22 7.04 30.59 0.22 0.43 15
12 H 0.13 4.79 8.14 -2.39 -0.02 4.77 15
13 O -0.37 -16.12 10.02 -148.98 -1.49 -17.61 15
14 C 0.07 2.45 6.85 72.09 0.49 2.95 15
15 C -0.18 -7.25 5.71 30.58 0.17 -7.08 15
16 C -0.06 -2.43 5.68 30.32 0.17 -2.26 15
17 C -0.17 -7.77 6.17 -11.33 -0.07 -7.84 15
18 H 0.09 3.70 8.14 -2.39 -0.02 3.68 15
19 H 0.26 14.31 8.31 -92.71 -0.77 13.54 15
20 H 0.05 1.72 8.09 -2.39 -0.02 1.70 15
21 H 0.10 3.13 8.14 -2.39 -0.02 3.11 15
22 H 0.07 2.49 8.14 -2.38 -0.02 2.47 15
23 H 0.09 4.33 4.40 -2.39 -0.01 4.32 15
24 H 0.04 1.96 8.14 -2.39 -0.02 1.94 15
25 H 0.06 2.13 8.14 -2.39 -0.02 2.11 15
Total: -1.00 -60.19 206.54 3.50 -56.70
By element:
Atomic # 1 Polarization: 6.73 SS G_CDS: 1.16 Total: 7.89 kcal
Atomic # 6 Polarization: -41.00 SS G_CDS: 1.51 Total: -39.48 kcal
Atomic # 7 Polarization: -53.18 SS G_CDS: 0.28 Total: -52.89 kcal
Atomic # 8 Polarization: -16.12 SS G_CDS: -1.49 Total: -17.61 kcal
Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal
Total: -60.19 3.50 -56.70 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000024448802.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 17.264 kcal
(2) G-P(sol) polarization free energy of solvation -60.190 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.926 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.495 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.695 kcal
(6) G-S(sol) free energy of system = (1) + (5) -39.431 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.10 seconds