Wall clock time and date at job start Mon Mar 30 2020 02:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 120.00228 * 2 1 4 4 H 1.48503 * 109.47397 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47246 * 300.00393 * 3 2 1 6 6 H 1.48503 * 109.47029 * 60.00661 * 3 2 1 7 7 C 1.38814 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00083 * 164.48141 * 7 2 1 9 9 N 1.36942 * 119.99693 * 344.21473 * 7 2 1 10 10 C 1.46043 * 120.07041 * 157.44035 * 9 7 2 11 11 C 1.52110 * 110.97601 * 143.10666 * 10 9 7 12 12 O 1.41197 * 113.17078 * 54.15338 * 11 10 9 13 13 C 1.42218 * 117.91936 * 311.93104 * 12 11 10 14 14 H 1.09007 * 115.54081 * 235.04349 * 13 12 11 15 15 C 1.52206 * 116.15400 * 91.36388 * 13 12 11 16 16 C 1.46380 * 120.06670 * 337.70848 * 9 7 2 17 17 H 1.08996 * 115.47804 * 336.85916 * 16 9 7 18 18 H 0.97002 * 119.99574 * 359.97438 * 1 2 3 19 19 H 1.08997 * 109.14938 * 263.58517 * 10 9 7 20 20 H 1.09007 * 109.14874 * 22.74411 * 10 9 7 21 21 H 1.09005 * 108.82909 * 293.15745 * 11 10 9 22 22 H 1.08995 * 108.60084 * 174.98985 * 11 10 9 23 23 H 1.09001 * 117.60694 * 142.81433 * 15 13 12 24 24 H 1.08996 * 117.21544 * 358.07694 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8916 2.3963 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0608 -1.2191 -0.2508 9 7 1.3643 -2.3659 0.3216 10 6 1.8966 -3.6480 -0.1319 11 6 1.6996 -4.7239 0.9251 12 8 0.3582 -4.8484 1.3479 13 6 -0.3446 -3.6607 1.6919 14 1 -0.7875 -3.6485 2.6878 15 6 -1.1220 -2.9916 0.5674 16 6 0.1356 -2.3268 1.1162 17 1 0.0044 -1.4381 1.7335 18 1 -0.4849 0.8401 0.0004 19 1 1.3837 -3.9445 -1.0469 20 1 2.9614 -3.5400 -0.3388 21 1 2.3184 -4.4848 1.7900 22 1 2.0272 -5.6789 0.5144 23 1 -2.0810 -2.5376 0.8169 24 1 -1.0601 -3.4469 -0.4210 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000026322011.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:20 Heat of formation + Delta-G solvation = 11.446123 kcal Electronic energy + Delta-G solvation = -10050.614028 eV Core-core repulsion = 8159.003117 eV Total energy + Delta-G solvation = -1891.610911 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 169.084 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.82428 -34.67000 -33.09279 -31.41606 -27.75344 -23.80908 -23.02478 -20.97641 -18.64460 -17.01824 -15.79311 -15.24197 -14.64987 -14.20000 -13.28136 -13.08235 -12.83541 -11.61951 -11.23114 -11.07164 -10.90357 -10.48116 -10.27853 -9.88818 -9.85784 -9.35206 -8.70207 -8.26108 -6.73848 -5.85226 -3.29693 3.32872 3.40565 3.42905 4.25603 4.47583 5.06248 5.23119 5.42775 5.68363 5.92130 5.99784 6.05299 6.26742 6.38796 6.50821 6.79081 6.88078 6.98291 7.39631 7.70477 8.11244 8.29093 9.10360 9.71231 10.20210 11.21333 Molecular weight = 169.08amu Principal moments of inertia in cm(-1) A = 0.076614 B = 0.017315 C = 0.015036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.382606 B = 1616.728537 C = 1861.767520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.006 3.994 3 Si 0.908 3.092 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.287 1.287 7 C -0.266 4.266 8 H 0.075 0.925 9 N -0.565 5.565 10 C 0.110 3.890 11 C 0.057 3.943 12 O -0.366 6.366 13 C -0.046 4.046 14 H 0.111 0.889 15 C -0.211 4.211 16 C 0.192 3.808 17 H 0.122 0.878 18 H 0.256 0.744 19 H 0.020 0.980 20 H 0.063 0.937 21 H 0.039 0.961 22 H 0.081 0.919 23 H 0.086 0.914 24 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.486 -4.297 2.230 5.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.194 4.194 3 Si 0.737 3.263 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.214 1.214 7 C -0.395 4.395 8 H 0.093 0.907 9 N -0.284 5.284 10 C -0.016 4.016 11 C -0.021 4.021 12 O -0.285 6.285 13 C -0.105 4.105 14 H 0.128 0.872 15 C -0.252 4.252 16 C 0.082 3.918 17 H 0.140 0.860 18 H 0.066 0.934 19 H 0.037 0.963 20 H 0.081 0.919 21 H 0.057 0.943 22 H 0.100 0.900 23 H 0.105 0.895 24 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.368 -4.321 2.208 5.042 hybrid contribution 0.335 1.071 -0.246 1.149 sum 1.703 -3.250 1.962 4.161 Atomic orbital electron populations 1.70038 1.05091 1.25519 1.53303 1.25039 0.95470 0.98474 1.00367 0.86148 0.79270 0.83530 0.77351 1.20190 1.21600 1.21377 1.19255 0.92617 0.84062 1.43551 0.90683 1.43224 1.25366 1.01537 1.58320 1.21150 0.98503 0.86970 0.94977 1.22233 0.83602 0.98953 0.97334 1.86970 1.25111 1.30481 1.85894 1.23544 1.02795 0.87782 0.96395 0.87155 1.23437 0.98947 1.05589 0.97252 1.21003 0.85667 0.90977 0.94114 0.86025 0.93420 0.96251 0.91897 0.94286 0.90049 0.89539 0.90314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.61 11.03 55.49 0.61 -25.00 14 2 C 0.01 0.16 5.08 -17.43 -0.09 0.07 14 3 Si 0.91 21.38 29.58 -169.99 -5.03 16.36 14 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 14 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 14 6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 14 7 C -0.27 -7.35 9.64 -15.06 -0.15 -7.49 14 8 H 0.08 2.00 7.82 -52.49 -0.41 1.59 14 9 N -0.56 -14.70 3.20 -166.95 -0.54 -15.24 14 10 C 0.11 2.43 6.45 -4.74 -0.03 2.40 14 11 C 0.06 1.10 6.92 36.70 0.25 1.36 14 12 O -0.37 -7.90 10.55 -34.98 -0.37 -8.27 14 13 C -0.05 -0.99 7.10 -27.13 -0.19 -1.18 14 14 H 0.11 2.12 8.14 -51.93 -0.42 1.69 14 15 C -0.21 -4.87 10.15 -27.41 -0.28 -5.15 14 16 C 0.19 4.79 4.62 -68.26 -0.32 4.48 14 17 H 0.12 3.22 6.93 -51.93 -0.36 2.86 14 18 H 0.26 7.02 8.31 -40.82 -0.34 6.68 14 19 H 0.02 0.45 8.14 -51.93 -0.42 0.02 14 20 H 0.06 1.28 7.93 -51.93 -0.41 0.87 14 21 H 0.04 0.74 8.14 -51.93 -0.42 0.32 14 22 H 0.08 1.31 8.14 -51.93 -0.42 0.89 14 23 H 0.09 1.86 8.14 -51.93 -0.42 1.43 14 24 H 0.08 1.91 8.14 -51.93 -0.42 1.49 14 LS Contribution 205.50 15.07 3.10 3.10 Total: -1.00 -29.64 205.50 -5.87 -35.52 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -2.85 Total: -0.94 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -0.80 Total: -5.52 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.08 Total: -40.24 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: -0.37 Total: -8.27 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 3.10 Total: 3.10 kcal Total: -29.64 -5.87 -35.52 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026322011.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.963 kcal (2) G-P(sol) polarization free energy of solvation -29.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds