Wall clock time and date at job start Mon Mar 30 2020 01:48:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.52996 * 115.55871 * 2 1
4 4 C 1.53069 * 117.49519 * 214.28891 * 2 1 3
5 5 H 1.09001 * 117.53410 * 145.04476 * 4 2 1
6 6 C 1.50706 * 117.49519 * 359.97438 * 4 2 1
7 7 H 1.07997 * 119.99820 * 0.02562 * 6 4 2
8 8 C 1.37873 * 120.00242 * 180.02562 * 6 4 2
9 9 N 1.31520 * 119.99786 * 359.97438 * 8 6 4
10 10 Si 1.86799 * 120.00404 * 180.02562 * 8 6 4
11 11 H 1.48502 * 109.47000 * 359.97438 * 10 8 6
12 12 H 1.48500 * 109.47108 * 119.99636 * 10 8 6
13 13 H 1.48498 * 109.47180 * 239.99938 * 10 8 6
14 14 C 1.53000 * 117.49792 * 145.68521 * 2 1 3
15 15 H 1.09002 * 117.49833 * 214.98161 * 14 2 1
16 16 C 1.50697 * 117.50034 * 359.97438 * 14 2 1
17 17 O 1.20763 * 120.00035 * 239.90943 * 16 14 2
18 18 H 1.08998 * 109.47616 * 325.70655 * 1 2 3
19 19 H 1.08996 * 109.47220 * 85.70939 * 1 2 3
20 20 H 1.09006 * 109.46853 * 205.70475 * 1 2 3
21 21 H 1.08999 * 109.46945 * 154.30062 * 3 2 1
22 22 H 1.09006 * 109.47222 * 274.29386 * 3 2 1
23 23 H 1.09002 * 109.47499 * 34.29318 * 3 2 1
24 24 H 0.97006 * 120.00136 * 180.02562 * 9 8 6
25 25 H 1.08000 * 119.99963 * 59.91489 * 16 14 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.1901 1.3802 0.0000
4 6 2.2367 -1.1218 -0.7649
5 1 3.1720 -0.8770 -1.2682
6 6 1.3721 -2.1420 -1.4598
7 1 0.2962 -2.0640 -1.4067
8 6 1.9545 -3.1748 -2.1634
9 7 3.2647 -3.2694 -2.2285
10 14 0.8829 -4.4389 -3.0254
11 1 -0.5479 -4.1103 -2.8013
12 1 1.1727 -4.4230 -4.4817
13 1 1.1718 -5.7887 -2.4778
14 6 2.2365 -1.1209 0.7651
15 1 3.1715 -0.8751 1.2684
16 6 1.3721 -2.1402 1.4615
17 8 1.4556 -2.2868 2.6572
18 1 -0.3634 0.8490 0.5790
19 1 -0.3633 0.0769 -1.0247
20 1 -0.3633 -0.9260 0.4458
21 1 3.1822 1.3085 0.4456
22 1 2.2775 1.7413 -1.0248
23 1 1.5810 2.0744 0.5790
24 1 3.6745 -3.9959 -2.7238
25 1 0.6779 -2.7396 0.8911
RHF calculation, no. of doubly occupied orbitals= 31
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000038803712.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:48:00
Heat of formation + Delta-G solvation = -45.091423 kcal
Electronic energy + Delta-G solvation = -9593.542713 eV
Core-core repulsion = 7764.906061 eV
Total energy + Delta-G solvation = -1828.636652 eV
No. of doubly occupied orbitals = 31
Molecular weight
(most abundant/longest-lived isotopes) = 168.089 amu
Computer time = 0.11 seconds
Orbital eigenvalues (eV)
-40.42317 -38.43917 -34.46664 -30.36074 -28.51218 -27.57719 -24.96096 -21.40650
-19.55224 -18.21856 -17.01077 -16.49310 -15.98713 -15.31116 -14.81348 -14.31124
-13.94438 -13.63218 -13.07991 -13.03327 -12.79399 -12.64774 -12.36724 -12.00721
-11.33371 -11.07856 -10.56258 -10.33109 -9.92039 -8.20208 -6.25630 1.06241
1.45065 1.48387 1.58794 2.41625 2.96513 3.43460 3.77075 4.10732
4.23266 4.42310 4.53209 4.80525 4.90518 5.02127 5.10594 5.12929
5.25297 5.37926 5.47265 5.61415 5.78086 6.30312 6.59445 6.83918
7.39079 8.90975
Molecular weight = 168.09amu
Principal moments of inertia in cm(-1)
A = 0.045441 B = 0.017309 C = 0.015555
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 616.041202 B = 1617.272251 C = 1799.633284
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.103 4.103
2 C -0.114 4.114
3 C -0.106 4.106
4 C 0.037 3.963
5 H 0.055 0.945
6 C -0.504 4.504
7 H 0.078 0.922
8 C 0.017 3.983
9 N -0.921 5.921
10 Si 0.956 3.044
11 H -0.255 1.255
12 H -0.281 1.281
13 H -0.285 1.285
14 C -0.274 4.274
15 H 0.088 0.912
16 C 0.402 3.598
17 O -0.526 6.526
18 H 0.068 0.932
19 H 0.066 0.934
20 H 0.045 0.955
21 H 0.048 0.952
22 H 0.064 0.936
23 H 0.073 0.927
24 H 0.264 0.736
25 H 0.108 0.892
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.981 4.613 0.560 6.812
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C -0.114 4.114
3 C -0.163 4.163
4 C 0.019 3.981
5 H 0.073 0.927
6 C -0.540 4.540
7 H 0.096 0.904
8 C -0.183 4.183
9 N -0.559 5.559
10 Si 0.781 3.219
11 H -0.178 1.178
12 H -0.207 1.207
13 H -0.211 1.211
14 C -0.294 4.294
15 H 0.106 0.894
16 C 0.265 3.735
17 O -0.404 6.404
18 H 0.087 0.913
19 H 0.084 0.916
20 H 0.064 0.936
21 H 0.067 0.933
22 H 0.083 0.917
23 H 0.092 0.908
24 H 0.073 0.927
25 H 0.124 0.876
Dipole moment (debyes) X Y Z Total
from point charges -4.799 4.433 1.105 6.626
hybrid contribution 0.217 -0.878 -0.466 1.018
sum -4.583 3.555 0.639 5.835
Atomic orbital electron populations
1.21271 0.91401 1.01124 1.02199 1.21731 0.95428 0.90634 1.03652
1.21315 0.99582 0.93313 1.02088 1.19976 0.97017 0.95067 0.86077
0.92674 1.21031 0.93490 1.08736 1.30779 0.90362 1.25883 0.95972
0.99919 0.96561 1.70099 1.10957 1.32731 1.42121 0.85516 0.79788
0.78460 0.78088 1.17817 1.20709 1.21061 1.23490 1.01416 1.03488
1.01047 0.89399 1.25470 0.80471 0.80276 0.87322 1.90231 1.65056
1.65094 1.19980 0.91288 0.91557 0.93642 0.93321 0.91714 0.90790
0.92696 0.87627
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -3.43 8.27 71.98 0.60 -2.84 15
2 C -0.11 -4.36 2.70 -52.16 -0.14 -4.50 15
3 C -0.11 -3.34 9.85 71.98 0.71 -2.63 15
4 C 0.04 1.78 5.31 -11.51 -0.06 1.71 15
5 H 0.06 2.92 7.90 -2.39 -0.02 2.90 15
6 C -0.50 -25.01 7.21 25.60 0.18 -24.82 15
7 H 0.08 3.65 6.60 -2.91 -0.02 3.63 15
8 C 0.02 0.88 5.46 84.65 0.46 1.34 15
9 N -0.92 -51.73 13.13 21.45 0.28 -51.45 15
10 Si 0.96 40.52 29.54 68.60 2.03 42.55 15
11 H -0.25 -10.09 7.11 99.48 0.71 -9.39 15
12 H -0.28 -11.83 7.11 99.48 0.71 -11.13 15
13 H -0.28 -12.10 7.11 99.48 0.71 -11.40 15
14 C -0.27 -12.07 5.91 -11.54 -0.07 -12.14 15
15 H 0.09 3.92 8.05 -2.39 -0.02 3.90 15
16 C 0.40 17.64 9.13 71.24 0.65 18.29 15
17 O -0.53 -24.87 17.92 -1.46 -0.03 -24.89 15
18 H 0.07 1.91 7.92 -2.39 -0.02 1.89 15
19 H 0.07 2.16 8.00 -2.39 -0.02 2.14 15
20 H 0.04 1.55 6.03 -2.38 -0.01 1.54 15
21 H 0.05 1.53 7.90 -2.39 -0.02 1.52 15
22 H 0.06 1.94 8.14 -2.38 -0.02 1.92 15
23 H 0.07 1.94 7.92 -2.39 -0.02 1.92 15
24 H 0.26 14.07 8.31 -92.70 -0.77 13.30 15
25 H 0.11 4.45 6.81 -2.91 -0.02 4.43 15
Total: -1.00 -57.97 219.32 5.78 -52.19
By element:
Atomic # 1 Polarization: 6.03 SS G_CDS: 1.16 Total: 7.19 kcal
Atomic # 6 Polarization: -27.92 SS G_CDS: 2.33 Total: -25.59 kcal
Atomic # 7 Polarization: -51.73 SS G_CDS: 0.28 Total: -51.45 kcal
Atomic # 8 Polarization: -24.87 SS G_CDS: -0.03 Total: -24.89 kcal
Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal
Total: -57.97 5.78 -52.19 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000038803712.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.099 kcal
(2) G-P(sol) polarization free energy of solvation -57.967 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.868 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.777 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.191 kcal
(6) G-S(sol) free energy of system = (1) + (5) -45.091 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.11 seconds