Wall clock time and date at job start Mon Mar 30 2020 01:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 115.55348 * 2 1 4 4 C 1.53003 * 117.49978 * 145.67222 * 2 1 3 5 5 H 1.08997 * 117.49922 * 214.97679 * 4 2 1 6 6 C 1.50698 * 117.49679 * 359.97438 * 4 2 1 7 7 H 1.07999 * 120.00068 * 0.02562 * 6 4 2 8 8 C 1.37880 * 119.99944 * 179.97438 * 6 4 2 9 9 N 1.31511 * 120.00265 * 0.02562 * 8 6 4 10 10 Si 1.86799 * 119.99919 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47476 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47215 * 120.00534 * 10 8 6 13 13 H 1.48505 * 109.46950 * 240.00309 * 10 8 6 14 14 C 1.53002 * 117.49807 * 214.33034 * 2 1 3 15 15 H 1.09003 * 117.49882 * 0.02562 * 14 2 1 16 16 C 1.50701 * 117.49981 * 145.02014 * 14 2 1 17 17 O 1.20757 * 120.00261 * 240.00361 * 16 14 2 18 18 H 1.09002 * 109.47153 * 34.41373 * 1 2 3 19 19 H 1.09001 * 109.46832 * 274.41564 * 1 2 3 20 20 H 1.09004 * 109.47261 * 154.41545 * 1 2 3 21 21 H 1.09007 * 109.46996 * 85.58197 * 3 2 1 22 22 H 1.08995 * 109.47579 * 205.58373 * 3 2 1 23 23 H 1.08997 * 109.47014 * 325.58756 * 3 2 1 24 24 H 0.97000 * 120.00366 * 179.97438 * 9 8 6 25 25 H 1.07999 * 120.00038 * 59.99918 * 16 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 2.2365 -1.1208 0.7653 5 1 3.1715 -0.8748 1.2685 6 6 1.3720 -2.1398 1.4619 7 1 0.2961 -2.0621 1.4088 8 6 1.9547 -3.1721 2.1662 9 7 3.2648 -3.2671 2.2305 10 14 0.8831 -4.4357 3.0291 11 1 -0.5476 -4.1067 2.8059 12 1 1.1722 -5.7859 2.4826 13 1 1.1730 -4.4187 4.4855 14 6 2.2364 -1.1207 -0.7654 15 1 1.6111 -1.8578 -1.2693 16 6 3.5292 -0.7807 -1.4611 17 8 3.6253 -0.9170 -2.6571 18 1 -0.3633 0.8478 -0.5808 19 1 -0.3633 0.0791 1.0246 20 1 -0.3634 -0.9269 -0.4438 21 1 2.2752 1.7423 1.0247 22 1 3.1829 1.3084 -0.4437 23 1 1.5818 2.0738 -0.5808 24 1 3.6747 -3.9931 2.7263 25 1 4.3698 -0.4149 -0.8901 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038803714.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:02 Heat of formation + Delta-G solvation = -45.820499 kcal Electronic energy + Delta-G solvation = -9499.375986 eV Core-core repulsion = 7670.707719 eV Total energy + Delta-G solvation = -1828.668267 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.42055 -38.48327 -34.48537 -30.29519 -28.84218 -27.45193 -24.76158 -21.52344 -19.64077 -18.29304 -16.96216 -16.44530 -16.20443 -15.36753 -14.82396 -14.35402 -13.88660 -13.41801 -13.23973 -12.98511 -12.81989 -12.67121 -12.32291 -12.11022 -11.38599 -11.03584 -10.68342 -10.32653 -9.91045 -8.22268 -6.25780 0.99036 1.41788 1.44279 1.55144 2.39985 2.96795 3.33335 3.70525 4.09116 4.23203 4.41805 4.47620 4.79189 4.90119 5.00137 5.11950 5.14224 5.25909 5.39568 5.52150 5.62032 5.77854 6.32246 6.50671 6.81526 7.37771 8.88772 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.051206 B = 0.015584 C = 0.013547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.682702 B = 1796.234924 C = 2066.425629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.114 4.114 3 C -0.111 4.111 4 C 0.038 3.962 5 H 0.069 0.931 6 C -0.508 4.508 7 H 0.067 0.933 8 C 0.016 3.984 9 N -0.918 5.918 10 Si 0.959 3.041 11 H -0.263 1.263 12 H -0.284 1.284 13 H -0.276 1.276 14 C -0.272 4.272 15 H 0.083 0.917 16 C 0.392 3.608 17 O -0.519 6.519 18 H 0.068 0.932 19 H 0.059 0.941 20 H 0.039 0.961 21 H 0.069 0.931 22 H 0.052 0.948 23 H 0.072 0.928 24 H 0.265 0.735 25 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.797 5.807 -0.545 6.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.168 4.168 4 C 0.019 3.981 5 H 0.087 0.913 6 C -0.545 4.545 7 H 0.085 0.915 8 C -0.184 4.184 9 N -0.556 5.556 10 Si 0.784 3.216 11 H -0.187 1.187 12 H -0.210 1.210 13 H -0.202 1.202 14 C -0.292 4.292 15 H 0.101 0.899 16 C 0.254 3.746 17 O -0.396 6.396 18 H 0.087 0.913 19 H 0.078 0.922 20 H 0.059 0.941 21 H 0.088 0.912 22 H 0.071 0.929 23 H 0.091 0.909 24 H 0.074 0.926 25 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.609 5.630 -1.094 6.301 hybrid contribution -0.252 -1.111 0.393 1.205 sum -2.861 4.518 -0.701 5.394 Atomic orbital electron populations 1.21169 0.91800 1.00874 1.01580 1.21714 0.95371 0.90661 1.03708 1.21412 0.99546 0.93212 1.02615 1.20002 0.97263 0.94849 0.85987 0.91337 1.21080 0.93277 1.09492 1.30625 0.91535 1.25846 0.96159 0.99722 0.96648 1.70048 1.10587 1.32794 1.42190 0.85489 0.79359 0.78483 0.78271 1.18747 1.21000 1.20159 1.23677 0.99818 1.05002 1.00743 0.89898 1.25615 0.91478 0.69563 0.87959 1.90261 1.85456 1.43896 1.19951 0.91270 0.92174 0.94148 0.91188 0.92888 0.90897 0.92597 0.86911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.40 8.42 71.98 0.61 -2.79 15 2 C -0.11 -4.37 2.70 -52.18 -0.14 -4.51 15 3 C -0.11 -3.35 9.69 71.98 0.70 -2.65 15 4 C 0.04 1.79 5.00 -11.52 -0.06 1.73 15 5 H 0.07 3.44 7.90 -2.39 -0.02 3.42 15 6 C -0.51 -26.60 8.75 25.60 0.22 -26.38 15 7 H 0.07 3.39 6.60 -2.91 -0.02 3.37 15 8 C 0.02 0.88 5.46 84.66 0.46 1.34 15 9 N -0.92 -51.70 13.13 21.45 0.28 -51.42 15 10 Si 0.96 42.04 29.54 68.60 2.03 44.07 15 11 H -0.26 -11.11 7.11 99.48 0.71 -10.41 15 12 H -0.28 -12.43 7.11 99.48 0.71 -11.73 15 13 H -0.28 -11.77 7.11 99.48 0.71 -11.06 15 14 C -0.27 -11.93 5.62 -11.51 -0.06 -12.00 15 15 H 0.08 3.97 8.05 -2.39 -0.02 3.95 15 16 C 0.39 15.76 9.62 71.24 0.69 16.44 15 17 O -0.52 -23.25 17.92 -1.44 -0.03 -23.28 15 18 H 0.07 1.98 7.93 -2.39 -0.02 1.96 15 19 H 0.06 2.08 8.00 -2.39 -0.02 2.07 15 20 H 0.04 1.50 7.75 -2.38 -0.02 1.48 15 21 H 0.07 1.98 8.14 -2.38 -0.02 1.96 15 22 H 0.05 1.52 6.18 -2.39 -0.01 1.51 15 23 H 0.07 1.87 7.93 -2.39 -0.02 1.85 15 24 H 0.27 14.12 8.31 -92.71 -0.77 13.35 15 25 H 0.11 3.86 7.77 -2.91 -0.02 3.84 15 Total: -1.00 -59.72 221.73 5.85 -53.87 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: 1.16 Total: 5.57 kcal Atomic # 6 Polarization: -31.22 SS G_CDS: 2.41 Total: -28.81 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: 0.28 Total: -51.42 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.03 Total: -23.28 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -59.72 5.85 -53.87 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038803714.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.049 kcal (2) G-P(sol) polarization free energy of solvation -59.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds