Wall clock time and date at job start Mon Mar 30 2020 01:48:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53004 * 115.54907 * 2 1
4 4 C 1.53001 * 117.49837 * 214.29691 * 2 1 3
5 5 H 1.08997 * 117.49893 * 145.02006 * 4 2 1
6 6 C 1.50703 * 117.50097 * 359.97438 * 4 2 1
7 7 H 1.07994 * 119.99689 * 0.02562 * 6 4 2
8 8 C 1.37878 * 120.00178 * 179.97438 * 6 4 2
9 9 N 1.31510 * 119.99837 * 0.02562 * 8 6 4
10 10 Si 1.86794 * 119.99891 * 180.02562 * 8 6 4
11 11 H 1.48499 * 109.47551 * 90.00178 * 10 8 6
12 12 H 1.48505 * 109.47045 * 210.00205 * 10 8 6
13 13 H 1.48504 * 109.46993 * 330.00019 * 10 8 6
14 14 C 1.53000 * 60.00077 * 252.50510 * 4 2 1
15 15 H 1.09005 * 117.51517 * 107.47438 * 14 4 2
16 16 C 1.50693 * 117.50334 * 252.50971 * 14 4 2
17 17 O 1.20761 * 120.00492 * 188.62004 * 16 14 4
18 18 H 1.09002 * 109.47153 * 325.71729 * 1 2 3
19 19 H 1.09001 * 109.46832 * 205.71920 * 1 2 3
20 20 H 1.09004 * 109.47261 * 85.71902 * 1 2 3
21 21 H 1.08998 * 109.46954 * 34.42089 * 3 2 1
22 22 H 1.09009 * 109.46847 * 154.41985 * 3 2 1
23 23 H 1.08992 * 109.47284 * 274.41689 * 3 2 1
24 24 H 0.96999 * 120.00084 * 179.97438 * 9 8 6
25 25 H 1.08001 * 119.99903 * 8.61682 * 16 14 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.1899 1.3804 0.0000
4 6 2.2364 -1.1212 -0.7647
5 1 3.1715 -0.8755 -1.2681
6 6 1.3720 -2.1414 -1.4598
7 1 0.2962 -2.0635 -1.4068
8 6 1.9547 -3.1734 -2.1644
9 7 3.2647 -3.2678 -2.2294
10 14 0.8831 -4.4375 -3.0265
11 1 0.5987 -3.9833 -4.4115
12 1 1.5926 -5.7414 -3.0691
13 1 -0.3938 -4.5927 -2.2844
14 6 2.2365 -1.1208 0.7653
15 1 1.6112 -1.8579 1.2691
16 6 3.5293 -0.7807 1.4610
17 8 3.6255 -0.9172 2.6570
18 1 -0.3633 0.8491 0.5789
19 1 -0.3633 -0.9259 0.4460
20 1 -0.3634 0.0767 -1.0248
21 1 1.5817 2.0738 0.5809
22 1 3.1829 1.3084 0.4438
23 1 2.2752 1.7424 -1.0245
24 1 3.6747 -3.9941 -2.7247
25 1 4.3698 -0.4149 0.8899
RHF calculation, no. of doubly occupied orbitals= 31
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000038803715.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:48:04
Heat of formation + Delta-G solvation = -29.206275 kcal
Electronic energy + Delta-G solvation = -9498.799760 eV
Core-core repulsion = 7670.851940 eV
Total energy + Delta-G solvation = -1827.947820 eV
No. of doubly occupied orbitals = 31
Molecular weight
(most abundant/longest-lived isotopes) = 168.089 amu
Computer time = 0.09 seconds
Orbital eigenvalues (eV)
-38.69670 -36.75985 -32.51268 -28.69798 -27.26573 -25.66499 -22.98313 -19.73071
-17.95916 -16.36734 -15.23687 -14.60194 -14.45367 -13.70770 -13.21448 -12.63058
-12.21118 -11.87574 -11.67335 -11.31468 -11.06364 -10.98548 -10.70291 -10.31242
-9.59550 -9.16633 -8.92642 -8.45924 -8.18116 -6.21842 -4.20922 2.67618
3.22825 3.30055 3.32958 4.29300 4.82991 5.08815 5.40222 5.66789
5.71352 6.01270 6.19301 6.23365 6.37437 6.46107 6.56217 6.76429
6.83175 6.88903 7.17385 7.46637 7.75956 8.19179 8.25925 8.81336
9.40125 10.88434
Molecular weight = 168.09amu
Principal moments of inertia in cm(-1)
A = 0.051201 B = 0.015587 C = 0.013549
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 546.732801 B = 1795.929894 C = 2066.139639
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.095 4.095
2 C -0.139 4.139
3 C -0.111 4.111
4 C 0.067 3.933
5 H 0.085 0.915
6 C -0.496 4.496
7 H 0.067 0.933
8 C 0.068 3.932
9 N -0.882 5.882
10 Si 0.898 3.102
11 H -0.278 1.278
12 H -0.285 1.285
13 H -0.272 1.272
14 C -0.264 4.264
15 H 0.106 0.894
16 C 0.384 3.616
17 O -0.497 6.497
18 H 0.037 0.963
19 H 0.054 0.946
20 H 0.058 0.942
21 H 0.047 0.953
22 H 0.046 0.954
23 H 0.058 0.942
24 H 0.265 0.735
25 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.141 4.778 0.564 5.266
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.139 4.139
3 C -0.168 4.168
4 C 0.049 3.951
5 H 0.103 0.897
6 C -0.532 4.532
7 H 0.085 0.915
8 C -0.136 4.136
9 N -0.518 5.518
10 Si 0.725 3.275
11 H -0.203 1.203
12 H -0.210 1.210
13 H -0.196 1.196
14 C -0.284 4.284
15 H 0.124 0.876
16 C 0.244 3.756
17 O -0.372 6.372
18 H 0.056 0.944
19 H 0.073 0.927
20 H 0.077 0.923
21 H 0.066 0.934
22 H 0.065 0.935
23 H 0.077 0.923
24 H 0.075 0.925
25 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges -1.935 4.584 1.117 5.099
hybrid contribution -0.448 -0.827 -0.438 1.038
sum -2.383 3.757 0.679 4.500
Atomic orbital electron populations
1.21124 0.92928 1.00179 1.01013 1.21464 0.94384 0.89931 1.08166
1.21358 0.99048 0.95158 1.01237 1.20114 0.97156 0.92428 0.85449
0.89739 1.20705 0.92903 1.08903 1.30713 0.91535 1.25080 0.95054
0.97833 0.95640 1.69942 1.09157 1.31969 1.40759 0.86493 0.80480
0.80579 0.79921 1.20345 1.21040 1.19645 1.23706 0.98697 1.03906
1.02124 0.87630 1.25379 0.91454 0.70422 0.88333 1.90264 1.85331
1.42691 1.18931 0.94429 0.92732 0.92310 0.93353 0.93545 0.92325
0.92525 0.90341
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -1.77 8.43 37.16 0.31 -1.46 15
2 C -0.14 -2.79 2.70 -154.51 -0.42 -3.21 15
3 C -0.11 -1.86 9.69 37.16 0.36 -1.50 15
4 C 0.07 1.60 5.01 -91.77 -0.46 1.14 15
5 H 0.08 2.11 7.90 -51.93 -0.41 1.70 15
6 C -0.50 -12.94 8.75 -34.44 -0.30 -13.24 15
7 H 0.07 1.70 6.60 -52.49 -0.35 1.35 15
8 C 0.07 1.81 5.46 -17.82 -0.10 1.72 15
9 N -0.88 -24.54 13.13 55.43 0.73 -23.81 15
10 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 15
11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15
12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15
13 H -0.27 -6.12 7.11 56.52 0.40 -5.72 15
14 C -0.26 -5.87 5.61 -91.77 -0.52 -6.38 15
15 H 0.11 2.50 8.05 -51.93 -0.42 2.08 15
16 C 0.38 7.98 9.62 36.00 0.35 8.32 15
17 O -0.50 -11.43 17.92 6.00 0.11 -11.32 15
18 H 0.04 0.60 7.92 -51.93 -0.41 0.19 15
19 H 0.05 1.05 7.75 -51.93 -0.40 0.65 15
20 H 0.06 1.08 8.00 -51.93 -0.42 0.66 15
21 H 0.05 0.72 7.92 -51.93 -0.41 0.31 15
22 H 0.05 0.74 6.18 -51.92 -0.32 0.42 15
23 H 0.06 0.93 8.14 -51.93 -0.42 0.50 15
24 H 0.27 6.99 8.31 -40.82 -0.34 6.65 15
25 H 0.08 1.44 7.77 -52.49 -0.41 1.03 15
LS Contribution 221.72 15.07 3.34 3.34
Total: -1.00 -28.32 221.72 -4.72 -33.03
By element:
Atomic # 1 Polarization: 1.04 SS G_CDS: -3.10 Total: -2.06 kcal
Atomic # 6 Polarization: -13.84 SS G_CDS: -0.77 Total: -14.61 kcal
Atomic # 7 Polarization: -24.54 SS G_CDS: 0.73 Total: -23.81 kcal
Atomic # 8 Polarization: -11.43 SS G_CDS: 0.11 Total: -11.32 kcal
Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal
Total LS contribution 3.34 Total: 3.34 kcal
Total: -28.32 -4.72 -33.03 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000038803715.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 3.827 kcal
(2) G-P(sol) polarization free energy of solvation -28.316 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.489 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.717 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.033 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.206 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.09 seconds