Wall clock time and date at job start Mon Mar 30 2020 01:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 115.55153 * 2 1 4 4 C 1.52998 * 117.49527 * 214.28929 * 2 1 3 5 5 H 1.08997 * 117.49715 * 145.02650 * 4 2 1 6 6 C 1.50696 * 117.50024 * 359.97438 * 4 2 1 7 7 O 1.20762 * 119.99732 * 119.99230 * 6 4 2 8 8 C 1.53003 * 117.49371 * 145.66549 * 2 1 3 9 9 H 1.09003 * 117.49635 * 214.99837 * 8 2 1 10 10 C 1.50701 * 117.50076 * 0.02562 * 8 2 1 11 11 H 1.08002 * 119.99761 * 359.97438 * 10 8 2 12 12 C 1.37871 * 119.99694 * 180.27668 * 10 8 2 13 13 N 1.31514 * 120.00482 * 359.71466 * 12 10 8 14 14 Si 1.86801 * 119.99746 * 179.72062 * 12 10 8 15 15 H 1.48494 * 109.47230 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.47301 * 119.99669 * 14 12 10 17 17 H 1.48498 * 109.47430 * 239.99516 * 14 12 10 18 18 H 1.09001 * 109.46967 * 274.33962 * 1 2 3 19 19 H 1.09004 * 109.46732 * 34.33169 * 1 2 3 20 20 H 1.08994 * 109.47457 * 154.32909 * 1 2 3 21 21 H 1.09000 * 109.46919 * 205.67366 * 3 2 1 22 22 H 1.09001 * 109.46995 * 325.66445 * 3 2 1 23 23 H 1.08997 * 109.47505 * 85.66841 * 3 2 1 24 24 H 1.07997 * 120.00232 * 299.98847 * 6 4 2 25 25 H 0.96995 * 120.00207 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1900 1.3803 0.0000 4 6 2.2364 -1.1213 -0.7646 5 1 3.1715 -0.8757 -1.2679 6 6 1.3720 -2.1415 -1.4595 7 8 1.4535 -2.2878 -2.6554 8 6 2.2364 -1.1207 0.7655 9 1 3.1714 -0.8746 1.2690 10 6 1.3719 -2.1404 1.4612 11 1 0.2960 -2.0625 1.4081 12 6 1.9545 -3.1690 2.1708 13 7 3.2646 -3.2636 2.2358 14 14 0.8829 -4.4284 3.0396 15 1 -0.5478 -4.1007 2.8144 16 1 1.1722 -5.7813 2.4998 17 1 1.1725 -4.4044 4.4959 18 1 -0.3633 0.0778 1.0247 19 1 -0.3633 0.8487 -0.5796 20 1 -0.3634 -0.9262 -0.4451 21 1 3.1823 1.3086 -0.4452 22 1 1.5811 2.0741 -0.5796 23 1 2.2767 1.7417 1.0247 24 1 0.6796 -2.7418 -0.8880 25 1 3.6745 -3.9870 2.7353 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038803717.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:06 Heat of formation + Delta-G solvation = -29.144605 kcal Electronic energy + Delta-G solvation = -9592.722864 eV Core-core repulsion = 7764.777718 eV Total energy + Delta-G solvation = -1827.945146 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.63113 -36.65910 -32.53622 -28.74613 -27.03426 -25.67730 -23.16095 -19.55058 -17.88297 -16.28911 -15.22836 -14.63930 -14.21500 -13.58323 -13.19708 -12.57780 -12.16530 -12.07926 -11.62302 -11.41162 -11.06306 -10.92798 -10.74000 -10.30690 -9.53932 -9.23516 -8.72691 -8.47686 -8.16284 -6.24237 -4.25273 2.86828 3.20190 3.29187 3.31701 4.26404 4.82229 5.25081 5.51614 5.71343 5.77240 6.03314 6.23111 6.30482 6.37126 6.47947 6.62231 6.74033 6.82781 6.87308 7.09729 7.45394 7.72871 8.21851 8.41193 8.78333 9.36616 10.85598 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.045443 B = 0.017301 C = 0.015549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.009024 B = 1617.992855 C = 1800.340505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.140 4.140 3 C -0.105 4.105 4 C -0.266 4.266 5 H 0.094 0.906 6 C 0.396 3.604 7 O -0.509 6.509 8 C 0.067 3.933 9 H 0.084 0.916 10 C -0.503 4.503 11 H 0.069 0.931 12 C 0.070 3.930 13 N -0.878 5.878 14 Si 0.894 3.106 15 H -0.269 1.269 16 H -0.281 1.281 17 H -0.281 1.281 18 H 0.061 0.939 19 H 0.039 0.961 20 H 0.050 0.950 21 H 0.049 0.951 22 H 0.045 0.955 23 H 0.055 0.945 24 H 0.097 0.903 25 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.452 3.888 -0.497 5.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.141 4.141 3 C -0.162 4.162 4 C -0.286 4.286 5 H 0.112 0.888 6 C 0.258 3.742 7 O -0.385 6.385 8 C 0.048 3.952 9 H 0.102 0.898 10 C -0.539 4.539 11 H 0.087 0.913 12 C -0.135 4.135 13 N -0.514 5.514 14 Si 0.721 3.279 15 H -0.193 1.193 16 H -0.207 1.207 17 H -0.207 1.207 18 H 0.080 0.920 19 H 0.058 0.942 20 H 0.069 0.931 21 H 0.068 0.932 22 H 0.064 0.936 23 H 0.074 0.926 24 H 0.113 0.887 25 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.254 3.694 -1.040 5.032 hybrid contribution -0.281 -0.716 0.483 0.909 sum -3.535 2.978 -0.557 4.656 Atomic orbital electron populations 1.21205 0.93218 1.00026 1.01323 1.21460 0.94059 0.90289 1.08271 1.21259 0.99337 0.94725 1.00913 1.23475 1.00930 1.01842 1.02386 0.88835 1.25351 0.80543 0.80682 0.87663 1.90235 1.64204 1.64749 1.19268 1.20111 0.97228 0.92327 0.85541 0.89777 1.20722 0.92945 1.09069 1.31208 0.91335 1.25088 0.95001 0.97870 0.95546 1.69967 1.09195 1.31871 1.40379 0.86491 0.80788 0.81126 0.79466 1.19315 1.20730 1.20689 0.92046 0.94227 0.93122 0.93198 0.93576 0.92598 0.88680 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.84 8.26 37.16 0.31 -1.53 15 2 C -0.14 -2.83 2.70 -154.51 -0.42 -3.24 15 3 C -0.11 -1.80 9.85 37.16 0.37 -1.44 15 4 C -0.27 -5.95 5.91 -91.77 -0.54 -6.49 15 5 H 0.09 2.09 8.05 -51.93 -0.42 1.67 15 6 C 0.40 8.90 9.13 36.00 0.33 9.23 15 7 O -0.51 -12.27 17.92 6.00 0.11 -12.17 15 8 C 0.07 1.59 5.30 -91.76 -0.49 1.10 15 9 H 0.08 2.17 7.90 -51.93 -0.41 1.76 15 10 C -0.50 -12.65 7.21 -34.44 -0.25 -12.90 15 11 H 0.07 1.66 6.60 -52.49 -0.35 1.31 15 12 C 0.07 1.81 5.46 -17.82 -0.10 1.72 15 13 N -0.88 -24.24 13.12 55.43 0.73 -23.51 15 14 Si 0.89 19.92 29.54 -169.99 -5.02 14.90 15 15 H -0.27 -5.83 7.11 56.52 0.40 -5.43 15 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 15 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 18 H 0.06 1.10 8.00 -51.93 -0.42 0.69 15 19 H 0.04 0.63 7.92 -51.93 -0.41 0.22 15 20 H 0.05 0.94 6.04 -51.93 -0.31 0.62 15 21 H 0.05 0.83 7.90 -51.93 -0.41 0.42 15 22 H 0.05 0.70 7.92 -51.93 -0.41 0.29 15 23 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15 24 H 0.10 2.07 6.81 -52.49 -0.36 1.71 15 25 H 0.27 6.92 8.31 -40.82 -0.34 6.58 15 LS Contribution 219.31 15.07 3.30 3.30 Total: -1.00 -27.73 219.31 -4.72 -32.45 By element: Atomic # 1 Polarization: 1.63 SS G_CDS: -3.05 Total: -1.42 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -0.79 Total: -13.56 kcal Atomic # 7 Polarization: -24.24 SS G_CDS: 0.73 Total: -23.51 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.11 Total: -12.17 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -27.73 -4.72 -32.45 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038803717.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.308 kcal (2) G-P(sol) polarization free energy of solvation -27.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds