Wall clock time and date at job start Mon Mar 30 2020 02:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47434 * 2 1 4 4 C 1.52994 * 109.46916 * 300.00459 * 3 2 1 5 5 C 1.52996 * 109.47119 * 299.99298 * 4 3 2 6 6 C 1.50702 * 109.47159 * 180.02562 * 5 4 3 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72211 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48496 * 109.47341 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46983 * 120.00379 * 10 8 6 13 13 H 1.48503 * 109.47491 * 240.00192 * 10 8 6 14 14 C 1.52996 * 109.47068 * 60.00573 * 5 4 3 15 15 C 1.52996 * 109.47166 * 240.00356 * 2 1 3 16 16 H 1.09003 * 109.47049 * 59.99900 * 1 2 3 17 17 H 1.08996 * 109.46830 * 179.97438 * 1 2 3 18 18 H 1.09001 * 109.46739 * 299.99974 * 1 2 3 19 19 H 1.08994 * 109.47175 * 120.00337 * 2 1 3 20 20 H 1.08994 * 109.47407 * 179.97438 * 3 2 1 21 21 H 1.09001 * 109.46679 * 59.99994 * 3 2 1 22 22 H 1.09004 * 109.46806 * 179.97438 * 4 3 2 23 23 H 1.09000 * 109.47828 * 59.99866 * 4 3 2 24 24 H 1.08994 * 109.47405 * 300.00252 * 5 4 3 25 25 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 26 26 H 1.09003 * 109.47532 * 60.00149 * 14 5 4 27 27 H 1.09001 * 109.47094 * 180.02562 * 14 5 4 28 28 H 1.09000 * 109.47665 * 180.02562 * 15 2 1 29 29 H 1.09004 * 109.47066 * 300.00004 * 15 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5300 2.1638 -1.2492 5 6 2.0400 1.4426 -2.4984 6 6 1.5381 2.1534 -3.7288 7 1 0.9178 3.0319 -3.6298 8 6 1.8761 1.6858 -4.9812 9 7 2.6318 0.6162 -5.1018 10 14 1.2603 2.5713 -6.5063 11 1 0.4350 3.7378 -6.1021 12 1 2.4190 3.0395 -7.3085 13 1 0.4379 1.6410 -7.3208 14 6 1.5300 0.0002 -2.4985 15 6 2.0400 -0.7212 -1.2493 16 1 -0.3633 0.5139 -0.8900 17 1 -0.3633 -1.0276 -0.0005 18 1 -0.3633 0.5138 0.8900 19 1 1.8933 -0.5139 0.8899 20 1 3.1300 1.4425 0.0005 21 1 1.6767 1.9563 0.8900 22 1 1.8931 3.1916 -1.2489 23 1 0.4400 2.1638 -1.2492 24 1 3.1300 1.4426 -2.4985 25 1 2.8692 0.2870 -5.9829 26 1 0.4400 0.0001 -2.4985 27 1 1.8937 -0.5138 -3.3883 28 1 3.1300 -0.7216 -1.2491 29 1 1.6767 -1.7489 -1.2493 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039184576.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:46 Heat of formation + Delta-G solvation = -36.518286 kcal Electronic energy + Delta-G solvation = -10113.653467 eV Core-core repulsion = 8421.221669 eV Total energy + Delta-G solvation = -1692.431798 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 168.121 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.04253 -33.13939 -30.40209 -29.52595 -26.53154 -24.20932 -21.40126 -20.38373 -17.54164 -16.24655 -14.84370 -14.37136 -13.73936 -13.03895 -12.86821 -12.12146 -11.90823 -11.45024 -11.18462 -10.93006 -10.82610 -10.55956 -10.23982 -10.05868 -9.81142 -9.66123 -9.13664 -8.71586 -8.48529 -8.20326 -5.90684 -3.96659 3.32984 3.40955 3.45097 4.49403 5.37848 5.54656 5.56480 5.61045 6.14925 6.21648 6.27123 6.31890 6.52020 6.60891 6.61807 6.68692 6.82759 6.89043 6.99510 7.10687 7.29143 7.40428 7.66306 7.84223 8.13530 8.26852 8.56941 9.08315 9.67517 11.14646 Molecular weight = 168.12amu Principal moments of inertia in cm(-1) A = 0.076353 B = 0.014460 C = 0.013685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.628767 B = 1935.936792 C = 2045.591475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 C -0.112 4.112 4 C -0.110 4.110 5 C 0.048 3.952 6 C -0.510 4.510 7 H 0.053 0.947 8 C 0.059 3.941 9 N -0.891 5.891 10 Si 0.887 3.113 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.285 1.285 14 C -0.109 4.109 15 C -0.114 4.114 16 H 0.070 0.930 17 H 0.043 0.957 18 H 0.041 0.959 19 H 0.049 0.951 20 H 0.052 0.948 21 H 0.042 0.958 22 H 0.042 0.958 23 H 0.049 0.951 24 H 0.022 0.978 25 H 0.258 0.742 26 H 0.036 0.964 27 H 0.087 0.913 28 H 0.049 0.951 29 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.164 -0.954 6.714 7.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.106 4.106 3 C -0.149 4.149 4 C -0.148 4.148 5 C 0.030 3.970 6 C -0.549 4.549 7 H 0.071 0.929 8 C -0.141 4.141 9 N -0.530 5.530 10 Si 0.716 3.284 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.211 1.211 14 C -0.147 4.147 15 C -0.152 4.152 16 H 0.089 0.911 17 H 0.062 0.938 18 H 0.060 0.940 19 H 0.067 0.933 20 H 0.070 0.930 21 H 0.060 0.940 22 H 0.061 0.939 23 H 0.068 0.932 24 H 0.040 0.960 25 H 0.068 0.932 26 H 0.054 0.946 27 H 0.106 0.894 28 H 0.068 0.932 29 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.086 -1.060 6.575 6.979 hybrid contribution -0.275 0.400 -0.882 1.007 sum -2.361 -0.660 5.693 6.198 Atomic orbital electron populations 1.21914 0.96104 1.00676 1.01731 1.21048 0.95481 0.96372 0.97709 1.21571 0.99882 0.95314 0.98143 1.21657 0.99752 0.98103 0.95247 1.18643 0.95958 0.91581 0.90836 1.21311 1.31040 1.11651 0.90867 0.92862 1.24980 0.95174 0.95090 0.98890 1.69905 1.37143 1.23032 1.22948 0.86612 0.78592 0.79791 0.83445 1.19880 1.21139 1.21125 1.21618 0.98362 0.98622 0.96132 1.21650 0.99776 0.97595 0.96144 0.91149 0.93782 0.94004 0.93280 0.92954 0.93957 0.93947 0.93196 0.95962 0.93249 0.94572 0.89449 0.93198 0.94204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 8.50 37.16 0.32 -2.13 15 2 C -0.09 -1.55 3.19 -90.62 -0.29 -1.84 15 3 C -0.11 -2.05 5.45 -26.73 -0.15 -2.20 15 4 C -0.11 -2.37 4.87 -26.74 -0.13 -2.50 15 5 C 0.05 1.23 2.10 -91.77 -0.19 1.04 15 6 C -0.51 -14.33 8.56 -34.44 -0.29 -14.63 15 7 H 0.05 1.48 7.74 -52.49 -0.41 1.08 15 8 C 0.06 1.67 5.31 -17.82 -0.09 1.58 15 9 N -0.89 -25.93 11.33 55.43 0.63 -25.30 15 10 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 15 11 H -0.27 -6.59 7.11 56.52 0.40 -6.19 15 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 15 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 15 14 C -0.11 -2.63 4.71 -26.73 -0.13 -2.76 15 15 C -0.11 -2.29 5.45 -26.73 -0.15 -2.44 15 16 H 0.07 1.30 4.81 -51.93 -0.25 1.05 15 17 H 0.04 0.67 8.14 -51.93 -0.42 0.25 15 18 H 0.04 0.61 8.14 -51.93 -0.42 0.19 15 19 H 0.05 0.78 8.14 -51.93 -0.42 0.36 15 20 H 0.05 0.96 8.14 -51.93 -0.42 0.54 15 21 H 0.04 0.69 8.14 -51.93 -0.42 0.27 15 22 H 0.04 0.90 8.14 -51.93 -0.42 0.48 15 23 H 0.05 1.06 6.43 -51.93 -0.33 0.73 15 24 H 0.02 0.62 8.14 -51.93 -0.42 0.20 15 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 15 26 H 0.04 0.86 6.43 -51.93 -0.33 0.53 15 27 H 0.09 2.37 6.08 -51.93 -0.32 2.05 15 28 H 0.05 1.02 8.14 -51.93 -0.42 0.59 15 29 H 0.04 0.74 8.14 -51.93 -0.42 0.32 15 LS Contribution 223.40 15.07 3.37 3.37 Total: -1.00 -28.28 223.40 -6.71 -34.98 By element: Atomic # 1 Polarization: 0.81 SS G_CDS: -4.58 Total: -3.77 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: -1.10 Total: -25.88 kcal Atomic # 7 Polarization: -25.93 SS G_CDS: 0.63 Total: -25.30 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -28.28 -6.71 -34.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039184576.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.533 kcal (2) G-P(sol) polarization free energy of solvation -28.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds