Wall clock time and date at job start Mon Mar 30 2020 01:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.08993 * 109.48920 * 300.27964 * 9 7 2 11 11 C 1.52964 * 109.48407 * 180.25204 * 9 7 2 12 12 C 1.52951 * 109.82030 * 176.44163 * 11 9 7 13 13 C 1.53229 * 109.41701 * 63.57730 * 12 11 9 14 14 C 1.51268 * 108.53683 * 305.37549 * 13 12 11 15 15 O 1.20755 * 120.85310 * 231.36718 * 14 13 12 16 16 C 1.51270 * 118.29553 * 51.35204 * 14 13 12 17 17 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 18 18 H 1.09005 * 109.41323 * 296.53370 * 11 9 7 19 19 H 1.09000 * 109.41149 * 56.31720 * 11 9 7 20 20 H 1.09005 * 109.47058 * 303.59810 * 12 11 9 21 21 H 1.08999 * 109.48311 * 183.56327 * 12 11 9 22 22 H 1.09004 * 109.62595 * 185.66724 * 13 12 11 23 23 H 1.08996 * 109.78259 * 65.18938 * 13 12 11 24 24 H 1.09003 * 109.62404 * 188.93385 * 16 14 13 25 25 H 1.08998 * 109.78892 * 68.46086 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6245 -2.5531 0.8955 11 6 2.2449 -3.6619 0.0098 12 6 1.4902 -4.9888 0.1051 13 6 0.6186 -5.1698 -1.1421 14 6 -0.2716 -3.9554 -1.2870 15 8 -1.4644 -4.0758 -1.4318 16 6 0.3706 -2.5865 -1.2456 17 1 -0.4850 0.8400 0.0004 18 1 2.8290 -3.6428 -0.9104 19 1 2.9142 -3.5632 0.8645 20 1 0.8578 -4.9841 0.9930 21 1 2.2045 -5.8094 0.1716 22 1 0.0039 -6.0633 -1.0327 23 1 1.2520 -5.2669 -2.0238 24 1 -0.4034 -1.8201 -1.2028 25 1 0.9828 -2.4390 -2.1353 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039389471.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:43 Heat of formation + Delta-G solvation = -65.257232 kcal Electronic energy + Delta-G solvation = -9702.874557 eV Core-core repulsion = 7873.363450 eV Total energy + Delta-G solvation = -1829.511107 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 168.089 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.88684 -35.75184 -32.83411 -29.84753 -27.90113 -25.07310 -21.76711 -20.27466 -18.15642 -16.43762 -14.97154 -14.51513 -14.32638 -13.80612 -13.54478 -12.82655 -12.33033 -11.97357 -11.29727 -11.07607 -10.91798 -10.55157 -10.36418 -10.26001 -9.70531 -9.43567 -9.09575 -8.51499 -8.25030 -6.04474 -4.12763 2.82161 3.27417 3.35824 3.38913 4.39163 5.00884 5.27091 5.45748 5.55473 5.69685 6.09379 6.24626 6.29226 6.47069 6.60825 6.67576 6.89077 6.95898 7.16896 7.62695 7.81974 7.99495 8.33314 8.40027 8.91807 9.53491 11.01446 Molecular weight = 168.09amu Principal moments of inertia in cm(-1) A = 0.070338 B = 0.015497 C = 0.013338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.984222 B = 1806.358803 C = 2098.744007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.061 3.939 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.060 0.940 9 C 0.055 3.945 10 H 0.029 0.971 11 C -0.115 4.115 12 C -0.112 4.112 13 C -0.170 4.170 14 C 0.357 3.643 15 O -0.487 6.487 16 C -0.157 4.157 17 H 0.262 0.738 18 H 0.053 0.947 19 H 0.056 0.944 20 H 0.059 0.941 21 H 0.058 0.942 22 H 0.071 0.929 23 H 0.089 0.911 24 H 0.111 0.889 25 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.725 -5.806 -1.199 7.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.141 4.141 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.078 0.922 9 C 0.036 3.964 10 H 0.048 0.952 11 C -0.153 4.153 12 C -0.149 4.149 13 C -0.208 4.208 14 C 0.236 3.764 15 O -0.363 6.363 16 C -0.195 4.195 17 H 0.072 0.928 18 H 0.072 0.928 19 H 0.074 0.926 20 H 0.078 0.922 21 H 0.076 0.924 22 H 0.089 0.911 23 H 0.107 0.893 24 H 0.129 0.871 25 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.951 -5.743 -1.268 6.580 hybrid contribution 0.508 0.914 -0.031 1.046 sum 3.459 -4.829 -1.299 6.080 Atomic orbital electron populations 1.69888 1.05949 1.26665 1.50106 1.25035 0.94863 0.99331 0.94894 0.86521 0.80091 0.83679 0.77631 1.19726 1.20997 1.20998 1.21193 0.93032 0.90205 1.51051 0.92186 1.18650 0.92288 0.92597 0.92873 0.95245 1.21695 0.98795 0.93805 1.00992 1.21537 0.98091 0.98987 0.96334 1.22320 0.99863 0.98079 1.00530 1.25574 0.88540 0.94230 0.68087 1.90284 1.18517 1.89885 1.37629 1.22470 1.02716 0.93046 1.01276 0.92801 0.92800 0.92562 0.92210 0.92369 0.91055 0.89314 0.87096 0.90818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.33 11.40 55.43 0.63 -24.70 15 2 C 0.06 1.65 5.31 -17.82 -0.09 1.55 15 3 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 15 4 H -0.27 -6.24 7.11 56.52 0.40 -5.83 15 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 7 C -0.52 -13.70 8.56 -34.44 -0.29 -13.99 15 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 15 9 C 0.05 1.31 2.11 -91.67 -0.19 1.12 15 10 H 0.03 0.78 8.14 -51.93 -0.42 0.36 15 11 C -0.12 -2.23 5.03 -26.77 -0.13 -2.36 15 12 C -0.11 -1.84 5.94 -26.64 -0.16 -2.00 15 13 C -0.17 -2.85 6.17 -27.49 -0.17 -3.02 15 14 C 0.36 7.66 6.72 -28.48 -0.19 7.47 15 15 O -0.49 -11.79 17.89 6.00 0.11 -11.68 15 16 C -0.16 -3.71 5.14 -27.48 -0.14 -3.85 15 17 H 0.26 7.13 8.31 -40.82 -0.34 6.79 15 18 H 0.05 0.99 8.14 -51.93 -0.42 0.57 15 19 H 0.06 1.06 8.14 -51.93 -0.42 0.64 15 20 H 0.06 1.01 8.14 -51.93 -0.42 0.59 15 21 H 0.06 0.79 8.14 -51.93 -0.42 0.37 15 22 H 0.07 1.11 8.14 -51.93 -0.42 0.68 15 23 H 0.09 1.30 8.14 -51.93 -0.42 0.88 15 24 H 0.11 3.02 6.27 -51.93 -0.33 2.69 15 25 H 0.07 1.66 8.14 -51.93 -0.42 1.23 15 LS Contribution 212.57 15.07 3.20 3.20 Total: -1.00 -29.05 212.57 -5.70 -34.75 By element: Atomic # 1 Polarization: 0.92 SS G_CDS: -3.25 Total: -2.32 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: -1.38 Total: -15.08 kcal Atomic # 7 Polarization: -25.33 SS G_CDS: 0.63 Total: -24.70 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.11 Total: -11.68 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 3.20 Total: 3.20 kcal Total: -29.05 -5.70 -34.75 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039389471.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.504 kcal (2) G-P(sol) polarization free energy of solvation -29.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds